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* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2015-11-04 19:28 Justin Lecher
  0 siblings, 0 replies; 30+ messages in thread
From: Justin Lecher @ 2015-11-04 19:28 UTC (permalink / raw
  To: gentoo-commits

commit:     fddaa01871af3e465b9bc4833a0ad68a2b91ffbb
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Nov  4 19:24:01 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Nov  4 19:28:09 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fddaa018

sci-chemistry/openbabel: Drop old

obsoletes

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=449852

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=553104

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.3.2.ebuild | 81 --------------------------
 1 file changed, 81 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.3.2.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2.ebuild
deleted file mode 100644
index b353748..0000000
--- a/sci-chemistry/openbabel/openbabel-2.3.2.ebuild
+++ /dev/null
@@ -1,81 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-WX_GTK_VER="2.8"
-
-inherit cmake-utils eutils wxwidgets
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
-IUSE="doc openmp test wxwidgets"
-
-RDEPEND="
-	dev-cpp/eigen:3
-	dev-libs/libxml2:2
-	sci-libs/inchi
-	sys-libs/zlib
-	wxwidgets? ( x11-libs/wxGTK:2.8[X] )"
-DEPEND="${RDEPEND}
-	>=dev-util/cmake-2.4.8
-	doc? ( app-doc/doxygen )"
-
-DOCS="AUTHORS ChangeLog NEWS README THANKS doc/*.inc doc/README* doc/*.mol2"
-
-PATCHES=( "${FILESDIR}"/${P}-test_lib_path.patch )
-
-pkg_setup() {
-	if use openmp; then
-		if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
-			ewarn "OpenMP is not available in your current selected gcc"
-			die "need openmp capable gcc"
-		fi
-		FORTRAN_NEED_OPENMP=1
-	fi
-}
-
-src_configure() {
-	local mycmakeargs=""
-	mycmakeargs="${mycmakeargs}
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		$(cmake-utils_use_enable openmp OPENMP)
-		$(cmake-utils_use wxwidgets BUILD_GUI)"
-
-	cmake-utils_src_configure
-}
-
-src_install() {
-	dohtml doc/{*.html,*.png}
-	if use doc ; then
-		insinto /usr/share/doc/${PF}/API/html
-		doins doc/API/html/*
-	fi
-
-	cmake-utils_src_install
-}
-
-src_test() {
-	local mycmakeargs=""
-	mycmakeargs="${mycmakeargs}
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		-DPYTHON_EXECUTABLE=false
-		$(cmake-utils_use_enable openmp OPENMP)
-		$(cmake-utils_use wxwidgets BUILD_GUI)
-		$(cmake-utils_use_enable test TESTS)"
-
-	cmake-utils_src_configure
-	cmake-utils_src_compile
-	cmake-utils_src_test -E py
-}
-
-pkg_postinst() {
-	optfeature "perl support" sci-chemistry/openbabel-perl
-	optfeature "python support" sci-chemistry/openbabel-python
-}


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2024-07-30 21:13 Pacho Ramos
  0 siblings, 0 replies; 30+ messages in thread
From: Pacho Ramos @ 2024-07-30 21:13 UTC (permalink / raw
  To: gentoo-commits

commit:     f4e00d7c36ad6412719aac744ac959977e38c9d9
Author:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Tue Jul 30 19:50:46 2024 +0000
Commit:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Tue Jul 30 21:11:53 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f4e00d7c

sci-chemistry/openbabel: sync live ebuild

Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-9999.ebuild | 12 ++++++++----
 1 file changed, 8 insertions(+), 4 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index d533ec698acf..fc4d6cab575e 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -3,13 +3,13 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 WX_GTK_VER=3.2-gtk3
 
 inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
 
 DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="https://openbabel.org/"
+HOMEPAGE="https://openbabel.org/ https://github.com/openbabel/openbabel/"
 
 if [[ "${PV}" == *9999* ]]; then
 	inherit git-r3
@@ -17,7 +17,7 @@ if [[ "${PV}" == *9999* ]]; then
 else
 	if [[ "${PV}" == *_p* ]]; then	# eg., openbabel-3.1.1_p20210325
 		# Set to commit hash
-		OPENBABEL_COMMIT=
+		OPENBABEL_COMMIT=08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b
 		SRC_URI="https://github.com/${PN}/${PN}/archive/${OPENBABEL_COMMIT}.tar.gz -> ${P}.tar.gz"
 		S="${WORKDIR}/${PN}-${OPENBABEL_COMMIT}"
 	else
@@ -25,7 +25,7 @@ else
 		SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz -> ${P}.tar.gz"
 		S="${WORKDIR}/${PN}-${MY_P}"
 	fi
-	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+	KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 fi
 
 SRC_URI="${SRC_URI}
@@ -80,6 +80,10 @@ RDEPEND="
 	)
 "
 
+PATCHES=(
+	"${FILESDIR}"/openbabel-3.1.1-fix-time-check-cmake.patch
+)
+
 pkg_pretend() {
 	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
 }


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2024-07-30 21:13 Pacho Ramos
  0 siblings, 0 replies; 30+ messages in thread
From: Pacho Ramos @ 2024-07-30 21:13 UTC (permalink / raw
  To: gentoo-commits

commit:     5d3e567b539bca53f8b2b3862a75320257a043cc
Author:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Tue Jul 30 19:50:38 2024 +0000
Commit:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Tue Jul 30 21:11:52 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5d3e567b

sci-chemistry/openbabel: enable py3.12

Closes: https://bugs.gentoo.org/929759
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
index bdfef2a675e8..fc4d6cab575e 100644
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 WX_GTK_VER=3.2-gtk3
 
 inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2024-06-29 18:08 Andreas Sturmlechner
  0 siblings, 0 replies; 30+ messages in thread
From: Andreas Sturmlechner @ 2024-06-29 18:08 UTC (permalink / raw
  To: gentoo-commits

commit:     c56fcfa02e53ee7d19cd16f683746ca60f9eb81d
Author:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sat Jun 29 17:37:55 2024 +0000
Commit:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sat Jun 29 17:37:55 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c56fcfa0

sci-chemistry/openbabel: drop 3.1.1_p20210225

Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>

 .../openbabel/openbabel-3.1.1_p20210225.ebuild     | 280 ---------------------
 1 file changed, 280 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
deleted file mode 100644
index d6a0165b20c5..000000000000
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
+++ /dev/null
@@ -1,280 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{9..11} )
-WX_GTK_VER=3.0-gtk3
-
-inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="https://openbabel.org/"
-
-if [[ "${PV}" == *9999* ]]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/openbabel/${PN}.git"
-else
-	if [[ "${PV}" == *_p* ]]; then	# eg., openbabel-3.1.1_p20210325
-		# Set to commit hash
-		OPENBABEL_COMMIT=08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b
-		SRC_URI="https://github.com/${PN}/${PN}/archive/${OPENBABEL_COMMIT}.tar.gz -> ${P}.tar.gz"
-		S="${WORKDIR}/${PN}-${OPENBABEL_COMMIT}"
-	else
-		MY_P="${PN}-$(ver_rs 1- -)"
-		SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz -> ${P}.tar.gz"
-		S="${WORKDIR}/${PN}-${MY_P}"
-	fi
-	KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
-fi
-
-SRC_URI="${SRC_URI}
-	https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png
-	https://openbabel.org/OBTitle.jpg ->  ${PN}.jpg"
-
-# See src/CMakeLists.txt for LIBRARY_VERSION
-SLOT="0/7.0.0"
-LICENSE="GPL-2"
-IUSE="cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples +inchi json minimal openmp perl png python test wxwidgets"
-
-RESTRICT="!test? ( test )"
-
-# Inaccurate dependency logic upstream
-REQUIRED_USE="
-	python? ( ${PYTHON_REQUIRED_USE} )
-	test? ( inchi json !minimal wxwidgets )
-"
-
-BDEPEND="
-	dev-lang/perl
-	doc? (
-		app-text/doxygen
-		dev-texlive/texlive-latex
-	)
-	perl? ( >=dev-lang/swig-2 )
-	python? ( >=dev-lang/swig-2 )
-	test? ( dev-lang/python )
-"
-
-COMMON_DEPEND="
-	dev-cpp/eigen:3
-	dev-libs/libxml2:2
-	sys-libs/zlib:=
-	inchi? ( sci-libs/inchi )
-	json? ( >=dev-libs/rapidjson-1.1.0 )
-	png? ( x11-libs/cairo )
-	python? ( ${PYTHON_DEPS} )
-	wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )
-"
-
-DEPEND="
-	${COMMON_DEPEND}
-	perl? ( dev-lang/perl )
-"
-
-RDEPEND="
-	${COMMON_DEPEND}
-	perl? (
-		dev-lang/perl:=
-		!sci-chemistry/openbabel-perl
-	)
-"
-
-PATCHES=(
-	"${FILESDIR}"/openbabel-3.1.1-fix-time-check-cmake.patch
-)
-
-pkg_pretend() {
-	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
-	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-prepare_python_bindings() {
-	mkdir -p scripts/${EPYTHON} || die
-	# Appends to scripts/CMakeLists.txt, substituting the correct tags, for
-	# each valid python implementation,
-	cat "${FILESDIR}"/${PN}-python.cmake | \
-		sed -e "s|@@EPYTHON@@|${EPYTHON}|" \
-			-e "s|@@PYTHON_INCUDE_DIR@@|$(python_get_includedir)|" \
-			-e "s|@@PYTHON_LIBS@@|$(python_get_LIBS)|" \
-			-e "s|@@PYTHON_SITEDIR@@|$(python_get_sitedir)|" >> \
-				scripts/CMakeLists.txt || die
-}
-
-src_prepare() {
-	cmake_src_prepare
-
-	if use perl; then
-		perl_set_version
-
-		sed -e "/\${LIB_INSTALL_DIR}\/auto/s|\${LIB_INSTALL_DIR}|${VENDOR_ARCH}|" \
-			-e "/\${LIB_INSTALL_DIR}\/Chemistry/s|\${LIB_INSTALL_DIR}|${VENDOR_ARCH}|" \
-			-i scripts/CMakeLists.txt || die
-	fi
-
-	if use python; then
-		# Skip the python bindings sections as we'll append our own
-		sed -e '/^if (PYTHON_BINDINGS)$/s|PYTHON_BINDINGS|false|' \
-			-i {scripts,test}/CMakeLists.txt || die
-		if use test; then
-			# Problems with testbindings built with -O2
-			local test_skip="@unittest.skip('Similar to Issue #2138')"
-			sed -e "/def testTemplates/s|^|    ${test_skip}\\n|" \
-				-i test/testbindings.py || die
-			test_skip="@unittest.skip('Similar to Issue #2246')"
-			sed -e "/^def test_write_string/s|^|${test_skip}\\n|" \
-				-i test/testobconv_writers.py || die
-			fi
-		python_foreach_impl prepare_python_bindings
-	fi
-
-	# Remove dependency automagic
-	if ! use png; then
-		sed -e '/^find_package(Cairo/d' -i CMakeLists.txt || die
-	fi
-	if ! use wxwidgets; then
-		sed -e '/^find_package(wxWidgets/d' -i CMakeLists.txt || die
-	fi
-	if ! use inchi; then
-		sed -e '/^else()$/s|else\(\)|elseif\(false\)|' \
-			-i cmake/modules/FindInchi.cmake || die
-	fi
-
-	# Don't install example bins to /usr/bin
-	if use examples; then
-		sed -e "/RUNTIME DESTINATION/s|bin|share/doc/${PF}/examples|" \
-			-i doc/examples/CMakeLists.txt || die
-	fi
-
-	# boost is only used if building with gcc-3.x, which isn't supported in
-	# Gentoo. Still, it shouldn't look for, and include, its headers
-	sed -e '/find_package(Boost/d' -i {{tools,src}/,}CMakeLists.txt || die
-}
-
-src_configure() {
-	if use json; then
-		# -DOPTIMIZE_NATIVE=ON also forces -march=native so use
-		# cpu_flags to set defines instead
-		use cpu_flags_x86_sse2 && append-cppflags -DRAPIDJSON_SSE2
-		use cpu_flags_x86_sse4_2 && append-cppflags -DRAPIDJSON_SSE42
-		use cpu_flags_arm_neon && append-cppflags -DRAPIDJSON_NEON
-	fi
-
-	use wxwidgets && setup-wxwidgets
-
-	use_bindings() {
-		(use perl || use python) && (echo 'yes' || die) || (echo 'no' || die)
-	}
-
-	local mycmakeargs=(
-		-DBUILD_DOCS=$(usex doc)
-		-DBUILD_EXAMPLES=$(usex examples)
-		-DBUILD_GUI=$(usex wxwidgets)
-		-DENABLE_OPENMP=$(usex openmp)
-		-DENABLE_TESTS=$(usex test)
-		-DMINIMAL_BUILD=$(usex minimal)
-		# Set this, otherwise it defaults to true and forces WITH_INCHI=true
-		-DOPENBABEL_USE_SYSTEM_INCHI=$(usex inchi)
-		-DOPTIMIZE_NATIVE=OFF
-		-DPERL_BINDINGS=$(usex perl)
-		-DPYTHON_BINDINGS=$(usex python)
-		-DRUN_SWIG=$(use_bindings)
-		-DWITH_COORDGEN=false
-		-DWITH_INCHI=$(usex inchi)
-		-DWITH_JSON=$(usex json)
-		-DWITH_MAEPARSER=false
-	)
-
-	if use test; then
-		# Help cmake find the python interpreter when dev-lang/python-exec is built
-		# without native-symlinks support.
-		python_setup
-		mycmakeargs+=( -DPYTHON_EXECUTABLE="${PYTHON}" )
-	fi
-
-	cmake_src_configure
-}
-
-src_test() {
-	# Wierd deadlock causes system_load to keep rising
-	cmake_src_test -j1
-}
-
-openbabel-optimize() {
-	python_optimize "${D}/$(python_get_sitedir)"/openbabel || die
-}
-
-src_install() {
-	cmake_src_install
-
-	docinto html
-	for x in doc/*.html; do
-		[[ ${x} != doc/api*.html ]] && dodoc ${x}
-	done
-	# Rendered in some html pages
-	newdoc "${DISTDIR}"/${PN}.png babel130.png
-	newdoc "${DISTDIR}"/${PN}.jpg OBTitle.jpg
-
-	if use doc; then
-		cmake_src_install docs
-		docinto html/API
-		dodoc -r doc/API/html/.
-	fi
-
-	if use examples; then
-		# no compression since we want ready-to-run scripts
-		docompress -x /usr/share/doc/${PF}/examples
-
-		# ${PV} doesn't correspond to the internal BABEL_VERSION for
-		# live or patch release builds so we grep it
-		local babel_ver=$(
-			grep '^#define BABEL_VERSION' < \
-				"${BUILD_DIR}"/include/openbabel/babelconfig.h | \
-				cut -d \" -f 2 || die
-		)
-		docinto examples/povray
-		dodoc doc/dioxin.* doc/README*.pov*
-		# Needed by the povray example
-		dosym ../../../../${PN}/${babel_ver}/babel_povray3.inc \
-			/usr/share/doc/${PF}/examples/povray/babel31.inc
-
-	fi
-
-	if use perl; then
-		docinto /
-		newdoc scripts/perl/Changes Changes.perl
-		newdoc scripts/perl/README README.perl
-		if use examples; then
-			docinto examples/perl
-			dodoc -r scripts/perl/examples/.
-		fi
-	fi
-
-	if use python; then
-		python_foreach_impl openbabel-optimize
-		docinto /
-		newdoc scripts/python/README.rst README.python.rst
-		docinto html
-		dodoc scripts/python/*.html
-		if use examples; then
-			docinto examples/python
-			dodoc -r scripts/python/examples/.
-		fi
-	fi
-
-	if use wxwidgets; then
-		make_desktop_entry obgui "Open Babel" ${PN}
-		doicon "${DISTDIR}"/${PN}.png
-	fi
-}
-
-pkg_postinst() {
-	use wxwidgets && xdg_desktop_database_update
-}
-
-pkg_postrm() {
-	use wxwidgets && xdg_desktop_database_update
-}


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2024-04-11 17:52 Arthur Zamarin
  0 siblings, 0 replies; 30+ messages in thread
From: Arthur Zamarin @ 2024-04-11 17:52 UTC (permalink / raw
  To: gentoo-commits

commit:     48080dc199d23a123b3d71277fcc9f635dd48e77
Author:     Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 11 17:52:17 2024 +0000
Commit:     Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Thu Apr 11 17:52:17 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=48080dc1

sci-chemistry/openbabel: Stabilize 3.1.1_p20210225-r1 amd64, #929186

Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
index 550c7236286f..bdfef2a675e8 100644
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
@@ -25,7 +25,7 @@ else
 		SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz -> ${P}.tar.gz"
 		S="${WORKDIR}/${PN}-${MY_P}"
 	fi
-	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+	KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 fi
 
 SRC_URI="${SRC_URI}


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2023-11-24 14:31 Pacho Ramos
  0 siblings, 0 replies; 30+ messages in thread
From: Pacho Ramos @ 2023-11-24 14:31 UTC (permalink / raw
  To: gentoo-commits

commit:     5d51f3a8f9c6c314856c2541c9aa1cb085d4928f
Author:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Fri Nov 24 13:59:09 2023 +0000
Commit:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Fri Nov 24 14:30:30 2023 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5d51f3a8

sci-chemistry/openbabel: Works with wxGTK 3.2

Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>

 ...enbabel-9999.ebuild => openbabel-3.1.1_p20210225-r1.ebuild} | 10 +++++++---
 sci-chemistry/openbabel/openbabel-9999.ebuild                  |  2 +-
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
similarity index 96%
copy from sci-chemistry/openbabel/openbabel-9999.ebuild
copy to sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
index 735a5e868ea5..837978dbe580 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225-r1.ebuild
@@ -4,12 +4,12 @@
 EAPI=8
 
 PYTHON_COMPAT=( python3_{9..11} )
-WX_GTK_VER=3.0-gtk3
+WX_GTK_VER=3.2-gtk3
 
 inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
 
 DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="https://openbabel.org/"
+HOMEPAGE="https://openbabel.org/ https://github.com/openbabel/openbabel/"
 
 if [[ "${PV}" == *9999* ]]; then
 	inherit git-r3
@@ -17,7 +17,7 @@ if [[ "${PV}" == *9999* ]]; then
 else
 	if [[ "${PV}" == *_p* ]]; then	# eg., openbabel-3.1.1_p20210325
 		# Set to commit hash
-		OPENBABEL_COMMIT=
+		OPENBABEL_COMMIT=08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b
 		SRC_URI="https://github.com/${PN}/${PN}/archive/${OPENBABEL_COMMIT}.tar.gz -> ${P}.tar.gz"
 		S="${WORKDIR}/${PN}-${OPENBABEL_COMMIT}"
 	else
@@ -80,6 +80,10 @@ RDEPEND="
 	)
 "
 
+PATCHES=(
+	"${FILESDIR}"/openbabel-3.1.1-fix-time-check-cmake.patch
+)
+
 pkg_pretend() {
 	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
 }

diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index 735a5e868ea5..b4641769ecfa 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -4,7 +4,7 @@
 EAPI=8
 
 PYTHON_COMPAT=( python3_{9..11} )
-WX_GTK_VER=3.0-gtk3
+WX_GTK_VER=3.2-gtk3
 
 inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
 


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2023-02-23 13:20 Andrew Ammerlaan
  0 siblings, 0 replies; 30+ messages in thread
From: Andrew Ammerlaan @ 2023-02-23 13:20 UTC (permalink / raw
  To: gentoo-commits

commit:     719bb0a8ab2710c391c3b4b22519f44b575c0a52
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Thu Feb 23 13:19:53 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Thu Feb 23 13:20:34 2023 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=719bb0a8

sci-chemistry/openbabel: enable py3.11

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-chemistry/openbabel/metadata.xml                     | 1 +
 sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild | 4 ++--
 sci-chemistry/openbabel/openbabel-9999.ebuild            | 4 ++--
 3 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
index f31c73d435ac..a81d304be773 100644
--- a/sci-chemistry/openbabel/metadata.xml
+++ b/sci-chemistry/openbabel/metadata.xml
@@ -13,6 +13,7 @@
 	</longdescription>
 	<upstream>
 		<remote-id type="sourceforge">openbabel</remote-id>
+		<remote-id type="github">openbabel/openbabel</remote-id>
 	</upstream>
 	<use>
 		<flag name="inchi">Build support for IUPAC International Chemical Identifier format</flag>

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
index 1a1d0819d044..e61c03450c34 100644
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{9..10} )
+PYTHON_COMPAT=( python3_{9..11} )
 WX_GTK_VER=3.0-gtk3
 
 inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
@@ -30,7 +30,7 @@ fi
 
 SRC_URI="${SRC_URI}
 	https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png
-	http://openbabel.org/OBTitle.jpg ->  ${PN}.jpg"
+	https://openbabel.org/OBTitle.jpg ->  ${PN}.jpg"
 
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/7.0.0"

diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index f585e1217c68..735a5e868ea5 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{9..10} )
+PYTHON_COMPAT=( python3_{9..11} )
 WX_GTK_VER=3.0-gtk3
 
 inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
@@ -30,7 +30,7 @@ fi
 
 SRC_URI="${SRC_URI}
 	https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png
-	http://openbabel.org/OBTitle.jpg ->  ${PN}.jpg"
+	https://openbabel.org/OBTitle.jpg ->  ${PN}.jpg"
 
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/7.0.0"


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2022-05-16  8:12 David Seifert
  0 siblings, 0 replies; 30+ messages in thread
From: David Seifert @ 2022-05-16  8:12 UTC (permalink / raw
  To: gentoo-commits

commit:     245c3a3bb2b6bcd1e8a047f5a13d0d9fd3c7ce19
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon May 16 08:12:14 2022 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon May 16 08:12:14 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=245c3a3b

sci-chemistry/openbabel: [QA] use tc-check-openmp correctly

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild | 6 +++++-
 sci-chemistry/openbabel/openbabel-9999.ebuild            | 6 +++++-
 2 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
index 97dfa6e9a236..61a6ad498b66 100644
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
@@ -80,8 +80,12 @@ RDEPEND="
 	)
 "
 
+pkg_pretend() {
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
 pkg_setup() {
-	use openmp && tc-check-openmp
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
 }
 
 prepare_python_bindings() {

diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index 2c73801d2362..956b061aed0f 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -80,8 +80,12 @@ RDEPEND="
 	)
 "
 
+pkg_pretend() {
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
 pkg_setup() {
-	use openmp && tc-check-openmp
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
 }
 
 prepare_python_bindings() {


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2022-03-10 21:12 Sam James
  0 siblings, 0 replies; 30+ messages in thread
From: Sam James @ 2022-03-10 21:12 UTC (permalink / raw
  To: gentoo-commits

commit:     f456eb2e83ed0559996a6aa0481b37d20ec9ebfb
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Thu Mar 10 05:23:31 2022 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Mar 10 21:10:50 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f456eb2e

sci-chemistry/openbabel: fix WhitespaceFound

Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild | 2 +-
 sci-chemistry/openbabel/openbabel-9999.ebuild            | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
index 99bc728c7908..97dfa6e9a236 100644
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
@@ -181,7 +181,7 @@ src_configure() {
 	)
 
 	if use test; then
-		# Help cmake find the python interpreter when dev-lang/python-exec is built 
+		# Help cmake find the python interpreter when dev-lang/python-exec is built
 		# without native-symlinks support.
 		python_setup
 		mycmakeargs+=( -DPYTHON_EXECUTABLE="${PYTHON}" )

diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index baf793cb651c..2c73801d2362 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -181,7 +181,7 @@ src_configure() {
 	)
 
 	if use test; then
-		# Help cmake find the python interpreter when dev-lang/python-exec is built 
+		# Help cmake find the python interpreter when dev-lang/python-exec is built
 		# without native-symlinks support.
 		python_setup
 		mycmakeargs+=( -DPYTHON_EXECUTABLE="${PYTHON}" )


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2022-03-07 14:33 Jakov Smolić
  0 siblings, 0 replies; 30+ messages in thread
From: Jakov Smolić @ 2022-03-07 14:33 UTC (permalink / raw
  To: gentoo-commits

commit:     525e27f497f13601007fc2d2e29e242e8f3eb01d
Author:     Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Mon Mar  7 14:32:30 2022 +0000
Commit:     Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Mon Mar  7 14:32:30 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=525e27f4

sci-chemistry/openbabel: Stabilize 3.1.1_p20210225 x86, #834115

Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
index d045618f3544..99bc728c7908 100644
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
@@ -25,7 +25,7 @@ else
 		SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz -> ${P}.tar.gz"
 		S="${WORKDIR}/${PN}-${MY_P}"
 	fi
-	KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+	KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
 fi
 
 SRC_URI="${SRC_URI}


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2022-03-07 14:33 Jakov Smolić
  0 siblings, 0 replies; 30+ messages in thread
From: Jakov Smolić @ 2022-03-07 14:33 UTC (permalink / raw
  To: gentoo-commits

commit:     1590749e662396890a35ab1155ae03789e7c0620
Author:     Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Mon Mar  7 14:31:59 2022 +0000
Commit:     Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Mon Mar  7 14:31:59 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1590749e

sci-chemistry/openbabel: Stabilize 3.1.1_p20210225 amd64, #834115

Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
index 67ac61c1741b..d045618f3544 100644
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -25,7 +25,7 @@ else
 		SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz -> ${P}.tar.gz"
 		S="${WORKDIR}/${PN}-${MY_P}"
 	fi
-	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+	KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 fi
 
 SRC_URI="${SRC_URI}


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2021-12-15 10:09 Andrew Ammerlaan
  0 siblings, 0 replies; 30+ messages in thread
From: Andrew Ammerlaan @ 2021-12-15 10:09 UTC (permalink / raw
  To: gentoo-commits

commit:     1fce6e91e642ac7fe5c3b9f675c54244be423a53
Author:     Peter Levine <plevine457 <AT> gmail <DOT> com>
AuthorDate: Mon Mar 22 05:00:23 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Wed Dec 15 10:09:01 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1fce6e91

sci-chemistry/openbabel: Bump openbabel-3.1.1_p20210225

Closes: https://bugs.gentoo.org/664124
Closes: https://bugs.gentoo.org/716208
Closes: https://bugs.gentoo.org/722860
Closes: https://bugs.gentoo.org/723434
Closes: https://bugs.gentoo.org/766003
Closes: https://bugs.gentoo.org/770493

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Peter Levine <plevine457 <AT> gmail.com>
Closes: https://github.com/gentoo/gentoo/pull/16182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-chemistry/openbabel/Manifest                   |   1 +
 .../openbabel/openbabel-3.1.1_p20210225.ebuild     | 272 +++++++++++++++++++++
 2 files changed, 273 insertions(+)

diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest
index ac334bea30ea..11fe53f8f9de 100644
--- a/sci-chemistry/openbabel/Manifest
+++ b/sci-chemistry/openbabel/Manifest
@@ -1,3 +1,4 @@
 DIST openbabel-2.4.1.tar.gz 11618304 BLAKE2B 8fc051e83add9be6456e281a109bd6bbec282a64ffc83309819f0decbf167b4914fbb7f1966e95e103f268754045b804317f51c79a952ace707c6af2bd320125 SHA512 427e678f0a911bd27b9a8a05e60b6e09f113be4e5dd180daaf80c28d06368e52b57501261755ab3817a8d31f2754db24471fd0ceee706d029386d6f70800e9c6
+DIST openbabel-3.1.1_p20210225.tar.gz 36674527 BLAKE2B bb82fc96f704249d211bd86c73de0cf4e7cfe5e2ba5c745aa8b4f6f19583837e2181d85101377810095f6b71fc3b91bf2f6f5636726fc8271c6905f1f8c59e7b SHA512 9ff7cb4acbfad7a9c5c8d0dd8930ac0390d0d0f2758d1a6120009071f47ffe718f92ad620d37f26f196babb14649c52b5eb7bb161c342ef36aec655e0a172de4
 DIST openbabel.jpg 12159 BLAKE2B b701df2b8c29df607dc2bd3997a282aa9a726d56c789ff2db900d33234dc691f76b6af12a4c9ccda4f09984504b863c40c39e8bf91058939996714ede2dd37c7 SHA512 998ea526c8c92f87dd203527fdd9f4e001357e951409209f41ab68e0b730fe12d97f9079c12ca289be413854ea2abcf8bb691ae5af823a6f29d6a590e1a3e2b0
 DIST openbabel.png 29060 BLAKE2B 8d217d92125cc73462437411dd4e0cc05179cb0934f5ed15a307acc6b549b8ebab250a48a05ef7657f48c6df394f37da9b659de61efb1477b79b573a5b393ad3 SHA512 bbcaaa37663b526c9038ccb9edaf05ccc3ad1a861739a737f05f363098d8402a10b36e341fcc0aca636e809c6c32db99bf987b41719a0c756bf5e31444d3eb70

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
new file mode 100644
index 000000000000..0ae9671774ae
--- /dev/null
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
@@ -0,0 +1,272 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7,8,9} )
+WX_GTK_VER=3.0-gtk3
+
+inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
+
+DESCRIPTION="Interconverts file formats used in molecular modeling"
+HOMEPAGE="https://openbabel.org/"
+
+if [[ "${PV}" == *9999* ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/openbabel/${PN}.git"
+else
+	if [[ "${PV}" == *_p* ]]; then	# eg., openbabel-3.1.1_p20210325
+		# Set to commit hash
+		OPENBABEL_COMMIT=08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b
+		SRC_URI="https://github.com/${PN}/${PN}/archive/${OPENBABEL_COMMIT}.tar.gz -> ${P}.tar.gz"
+		S="${WORKDIR}/${PN}-${OPENBABEL_COMMIT}"
+	else
+		MY_P="${PN}-$(ver_rs 1- -)"
+		SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz -> ${P}.tar.gz"
+		S="${WORKDIR}/${PN}-${MY_P}"
+	fi
+	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+fi
+
+SRC_URI="${SRC_URI}
+	https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png
+	http://openbabel.org/OBTitle.jpg ->  ${PN}.jpg"
+
+# See src/CMakeLists.txt for LIBRARY_VERSION
+SLOT="0/7.0.0"
+LICENSE="GPL-2"
+IUSE="cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples +inchi json minimal openmp perl png python test wxwidgets"
+
+RESTRICT="!test? ( test )"
+
+# Inaccurate dependency logic upstream
+REQUIRED_USE="
+	python? ( ${PYTHON_REQUIRED_USE} )
+	test? ( inchi json !minimal wxwidgets )
+"
+
+BDEPEND="
+	dev-lang/perl
+	doc? (
+		app-doc/doxygen
+		dev-texlive/texlive-latex
+	)
+	perl? ( >=dev-lang/swig-2 )
+	python? ( >=dev-lang/swig-2 )
+	test? ( dev-lang/python )
+"
+
+COMMON_DEPEND="
+	dev-cpp/eigen:3
+	dev-libs/libxml2:2
+	sys-libs/zlib:=
+	inchi? ( sci-libs/inchi )
+	json? ( >=dev-libs/rapidjson-1.1.0 )
+	png? ( x11-libs/cairo )
+	python? ( ${PYTHON_DEPS} )
+	wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )
+"
+
+DEPEND="
+	${COMMON_DEPEND}
+	perl? ( dev-lang/perl )
+"
+
+RDEPEND="
+	${COMMON_DEPEND}
+	perl? (
+		dev-lang/perl:=
+		!sci-chemistry/openbabel-perl
+	)
+"
+
+pkg_setup() {
+	use openmp && tc-check-openmp
+}
+
+prepare_python_bindings() {
+	mkdir -p scripts/${EPYTHON} || die
+	# Appends to scripts/CMakeLists.txt, substituting the correct tags, for
+	# each valid python implementation,
+	cat "${FILESDIR}"/${PN}-python.cmake | \
+		sed -e "s|@@EPYTHON@@|${EPYTHON}|" \
+			-e "s|@@PYTHON_INCUDE_DIR@@|$(python_get_includedir)|" \
+			-e "s|@@PYTHON_LIBS@@|$(python_get_LIBS)|" \
+			-e "s|@@PYTHON_SITEDIR@@|$(python_get_sitedir)|" >> \
+				scripts/CMakeLists.txt || die
+}
+
+src_prepare() {
+	cmake_src_prepare
+
+	if use perl; then
+		perl_set_version
+
+		sed -e "/\${LIB_INSTALL_DIR}\/auto/s|\${LIB_INSTALL_DIR}|${VENDOR_ARCH}|" \
+			-e "/\${LIB_INSTALL_DIR}\/Chemistry/s|\${LIB_INSTALL_DIR}|${VENDOR_ARCH}|" \
+			-i scripts/CMakeLists.txt || die
+	fi
+
+	if use python; then
+		# Skip the python bindings sections as we'll append our own
+		sed -e '/^if (PYTHON_BINDINGS)$/s|PYTHON_BINDINGS|false|' \
+			-i {scripts,test}/CMakeLists.txt || die
+		if use test; then
+			# Problems with testbindings built with -O2
+			local test_skip="@unittest.skip('Similar to Issue #2138')"
+			sed -e "/def testTemplates/s|^|    ${test_skip}\\n|" \
+				-i test/testbindings.py || die
+			test_skip="@unittest.skip('Similar to Issue #2246')"
+			sed -e "/^def test_write_string/s|^|${test_skip}\\n|" \
+				-i test/testobconv_writers.py || die
+			fi
+		python_foreach_impl prepare_python_bindings
+	fi
+
+	# Remove dependency automagic
+	if ! use png; then
+		sed -e '/^find_package(Cairo/d' -i CMakeLists.txt || die
+	fi
+	if ! use wxwidgets; then
+		sed -e '/^find_package(wxWidgets/d' -i CMakeLists.txt || die
+	fi
+	if ! use inchi; then
+		sed -e '/^else()$/s|else\(\)|elseif\(false\)|' \
+			-i cmake/modules/FindInchi.cmake || die
+	fi
+
+	# Don't install example bins to /usr/bin
+	if use examples; then
+		sed -e "/RUNTIME DESTINATION/s|bin|share/doc/${PF}/examples|" \
+			-i doc/examples/CMakeLists.txt || die
+	fi
+
+	# boost is only used if building with gcc-3.x, which isn't supported in
+	# Gentoo. Still, it shouldn't look for, and include, its headers
+	sed -e '/find_package(Boost/d' -i {{tools,src}/,}CMakeLists.txt || die
+}
+
+src_configure() {
+	if use json; then
+		# -DOPTIMIZE_NATIVE=ON also forces -march=native so use
+		# cpu_flags to set defines instead
+		use cpu_flags_x86_sse2 && append-cppflags -DRAPIDJSON_SSE2
+		use cpu_flags_x86_sse4_2 && append-cppflags -DRAPIDJSON_SSE42
+		use cpu_flags_arm_neon && append-cppflags -DRAPIDJSON_NEON
+	fi
+
+	use wxwidgets && setup-wxwidgets
+
+	use_bindings() {
+		(use perl || use python) && (echo 'yes' || die) || (echo 'no' || die)
+	}
+
+	local mycmakeargs=(
+		-DBUILD_DOCS=$(usex doc)
+		-DBUILD_EXAMPLES=$(usex examples)
+		-DBUILD_GUI=$(usex wxwidgets)
+		-DENABLE_OPENMP=$(usex openmp)
+		-DENABLE_TESTS=$(usex test)
+		-DMINIMAL_BUILD=$(usex minimal)
+		# Set this, otherwise it defaults to true and forces WITH_INCHI=true
+		-DOPENBABEL_USE_SYSTEM_INCHI=$(usex inchi)
+		-DOPTIMIZE_NATIVE=OFF
+		-DPERL_BINDINGS=$(usex perl)
+		-DPYTHON_BINDINGS=$(usex python)
+		-DRUN_SWIG=$(use_bindings)
+		-DWITH_COORDGEN=false
+		-DWITH_INCHI=$(usex inchi)
+		-DWITH_JSON=$(usex json)
+		-DWITH_MAEPARSER=false
+	)
+
+	if use test; then
+		# Help cmake find the python interpreter when dev-lang/python-exec is built 
+		# without native-symlinks support.
+		python_setup
+		mycmakeargs+=( -DPYTHON_EXECUTABLE="${PYTHON}" )
+	fi
+
+	cmake_src_configure
+}
+
+src_test() {
+	# Wierd deadlock causes system_load to keep rising
+	cmake_src_test -j1
+}
+
+openbabel-optimize() {
+	python_optimize "${D}/$(python_get_sitedir)"/openbabel || die
+}
+
+src_install() {
+	cmake_src_install
+
+	docinto html
+	for x in doc/*.html; do
+		[[ ${x} != doc/api*.html ]] && dodoc ${x}
+	done
+	# Rendered in some html pages
+	newdoc "${DISTDIR}"/${PN}.png babel130.png
+	newdoc "${DISTDIR}"/${PN}.jpg OBTitle.jpg
+
+	if use doc; then
+		cmake_src_install docs
+		docinto html/API
+		dodoc -r doc/API/html/.
+	fi
+
+	if use examples; then
+		# no compression since we want ready-to-run scripts
+		docompress -x /usr/share/doc/${PF}/examples
+
+		# ${PV} doesn't correspond to the internal BABEL_VERSION for
+		# live or patch release builds so we grep it
+		local babel_ver=$(
+			grep '^#define BABEL_VERSION' < \
+				"${BUILD_DIR}"/include/openbabel/babelconfig.h | \
+				cut -d \" -f 2 || die
+		)
+		docinto examples/povray
+		dodoc doc/dioxin.* doc/README*.pov*
+		# Needed by the povray example
+		dosym ../../../../${PN}/${babel_ver}/babel_povray3.inc \
+			/usr/share/doc/${PF}/examples/povray/babel31.inc
+
+	fi
+
+	if use perl; then
+		docinto /
+		newdoc scripts/perl/Changes Changes.perl
+		newdoc scripts/perl/README README.perl
+		if use examples; then
+			docinto examples/perl
+			dodoc -r scripts/perl/examples/.
+		fi
+	fi
+
+	if use python; then
+		python_foreach_impl openbabel-optimize
+		docinto /
+		newdoc scripts/python/README.rst README.python.rst
+		docinto html
+		dodoc scripts/python/*.html
+		if use examples; then
+			docinto examples/python
+			dodoc -r scripts/python/examples/.
+		fi
+	fi
+
+	if use wxwidgets; then
+		make_desktop_entry obgui "Open Babel" ${PN}
+		doicon "${DISTDIR}"/${PN}.png
+	fi
+}
+
+pkg_postinst() {
+	use wxwidgets && xdg_desktop_database_update
+}
+
+pkg_postrm() {
+	use wxwidgets && xdg_desktop_database_update
+}


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2021-12-15 10:09 Andrew Ammerlaan
  0 siblings, 0 replies; 30+ messages in thread
From: Andrew Ammerlaan @ 2021-12-15 10:09 UTC (permalink / raw
  To: gentoo-commits

commit:     e0157f6f68726348c983f26fc15520f8c887d869
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Wed Dec 15 10:08:27 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Wed Dec 15 10:09:02 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e0157f6f

sci-chemistry/openbabel: bump EAPI=8, add python310

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild | 4 ++--
 sci-chemistry/openbabel/openbabel-9999.ebuild            | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
index 0ae9671774ae..67ac61c1741b 100644
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
@@ -1,9 +1,9 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{8..10} )
 WX_GTK_VER=3.0-gtk3
 
 inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils

diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index 8f231a4565a2..baf793cb651c 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -1,9 +1,9 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{8..10} )
 WX_GTK_VER=3.0-gtk3
 
 inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2021-03-28 11:00 Sam James
  0 siblings, 0 replies; 30+ messages in thread
From: Sam James @ 2021-03-28 11:00 UTC (permalink / raw
  To: gentoo-commits

commit:     1ef2edde5b2c3163bc3fa7747233a1a55c6d3da5
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 28 10:59:05 2021 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Mar 28 10:59:05 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1ef2edde

sci-chemistry/openbabel: Stabilize 2.4.1-r2 x86, #722860

Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild
index 014c88e1c52..95161d26d6d 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/5.0.0"
 LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 RESTRICT="!test? ( test )"
 


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2021-03-28 10:00 Agostino Sarubbo
  0 siblings, 0 replies; 30+ messages in thread
From: Agostino Sarubbo @ 2021-03-28 10:00 UTC (permalink / raw
  To: gentoo-commits

commit:     92d93b0c77bfac8167351e2ac6f91ef0bb4e4997
Author:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 28 09:59:53 2021 +0000
Commit:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Sun Mar 28 09:59:53 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=92d93b0c

sci-chemistry/openbabel: amd64 stable wrt bug #722860

Package-Manager: Portage-3.0.13, Repoman-3.0.2
RepoMan-Options: --include-arches="amd64"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild
index 8830108275b..014c88e1c52 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1-r2.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/5.0.0"
 LICENSE="GPL-2"
-KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 RESTRICT="!test? ( test )"
 


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2021-01-18 10:14 David Seifert
  0 siblings, 0 replies; 30+ messages in thread
From: David Seifert @ 2021-01-18 10:14 UTC (permalink / raw
  To: gentoo-commits

commit:     d4e3550d0dca9459d72d6b96c7246447227fa8cd
Author:     Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr>
AuthorDate: Mon Jan 18 10:14:13 2021 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Jan 18 10:14:13 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d4e3550d

sci-chemistry/openbabel: Remove old

Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr>
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.4.1.ebuild | 94 --------------------------
 1 file changed, 94 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
deleted file mode 100644
index 6f60a5ab135..00000000000
--- a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
+++ /dev/null
@@ -1,94 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-WX_GTK_VER="3.0"
-
-inherit cmake-utils optfeature toolchain-funcs wxwidgets
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
-
-# See src/CMakeLists.txt for LIBRARY_VERSION
-SLOT="0/5.0.0"
-LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
-IUSE="doc openmp test wxwidgets"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	dev-cpp/eigen:3
-	dev-libs/libxml2:2
-	sci-libs/inchi
-	sys-libs/zlib
-	wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )"
-DEPEND="${RDEPEND}
-	>=dev-util/cmake-2.4.8
-	doc? ( app-doc/doxygen )"
-
-DOCS=( AUTHORS NEWS.md README.md THANKS doc/dioxin.{inc,mol2} doc/README.{dioxin.pov,povray} )
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-2.3.2-gcc-6_and_7-backport.patch
-	"${FILESDIR}"/${P}-gcc-8.patch
-	)
-
-pkg_setup() {
-	if use openmp; then
-		if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
-			ewarn "OpenMP is not available in your current selected gcc"
-			die "need openmp capable gcc"
-		fi
-		FORTRAN_NEED_OPENMP=1
-	fi
-}
-
-src_prepare() {
-	sed \
-		-e '/__GNUC__/s:== 4:>= 4:g' \
-		-i include/openbabel/shared_ptr.h || die
-	cmake-utils_src_prepare
-}
-
-src_configure() {
-	use wxwidgets && need-wxwidgets unicode
-	local mycmakeargs=(
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		-DOPENMP=$(usex openmp)
-		-DBUILD_GUI=$(usex wxwidgets)
-	)
-
-	cmake-utils_src_configure
-}
-
-src_install() {
-	docinto html
-	dodoc doc/{*.html,*.png}
-	if use doc ; then
-		docinto html/API
-		dodoc -r doc/API/html/*
-	fi
-
-	cmake-utils_src_install
-}
-
-src_test() {
-	local mycmakeargs=(
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		-DPYTHON_EXECUTABLE=false
-		-DOPENMP=$(usex openmp)
-		-DBUILD_GUI=$(usex wxwidgets)
-		-DTESTS=$(usex test)
-	)
-
-	cmake-utils_src_configure
-	cmake-utils_src_compile
-	cmake-utils_src_test -E py
-}
-
-pkg_postinst() {
-	optfeature "perl support" sci-chemistry/openbabel-perl
-	optfeature "python support" sci-chemistry/openbabel-python
-}


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2020-12-18 10:48 Agostino Sarubbo
  0 siblings, 0 replies; 30+ messages in thread
From: Agostino Sarubbo @ 2020-12-18 10:48 UTC (permalink / raw
  To: gentoo-commits

commit:     9471a8b327f1b3f58d234f6fd81bb3d611be9854
Author:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Fri Dec 18 10:48:28 2020 +0000
Commit:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Fri Dec 18 10:48:28 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9471a8b3

sci-chemistry/openbabel: amd64 stable wrt bug #757912

Package-Manager: Portage-3.0.9, Repoman-3.0.2
RepoMan-Options: --include-arches="amd64"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
index e894bd98ef3..db8203212fa 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/5.0.0"
 LICENSE="GPL-2"
-KEYWORDS="~amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 RESTRICT="!test? ( test )"
 


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2020-12-02  3:06 Thomas Deutschmann
  0 siblings, 0 replies; 30+ messages in thread
From: Thomas Deutschmann @ 2020-12-02  3:06 UTC (permalink / raw
  To: gentoo-commits

commit:     2f3d99881b4471c635b2ef56a130a8ca5a8c8907
Author:     Thomas Deutschmann <whissi <AT> gentoo <DOT> org>
AuthorDate: Wed Dec  2 03:06:04 2020 +0000
Commit:     Thomas Deutschmann <whissi <AT> gentoo <DOT> org>
CommitDate: Wed Dec  2 03:06:04 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2f3d9988

sci-chemistry/openbabel: x86 stable (bug #757912)

Package-Manager: Portage-3.0.10, Repoman-3.0.2
Signed-off-by: Thomas Deutschmann <whissi <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
index 02f4b074850..e894bd98ef3 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/5.0.0"
 LICENSE="GPL-2"
-KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="~amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 RESTRICT="!test? ( test )"
 


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2020-09-07  8:55 David Seifert
  0 siblings, 0 replies; 30+ messages in thread
From: David Seifert @ 2020-09-07  8:55 UTC (permalink / raw
  To: gentoo-commits

commit:     a89df46a4176b48ca7f1bd4f9158d7291aeba432
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Sep  7 08:53:48 2020 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Sep  7 08:53:48 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a89df46a

sci-chemistry/openbabel: Inherit optfeature.eclass

Package-Manager: Portage-3.0.5, Repoman-3.0.1
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild | 2 +-
 sci-chemistry/openbabel/openbabel-2.4.1.ebuild    | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
index febff8ef60c..02f4b074850 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
@@ -4,7 +4,7 @@
 EAPI=7
 WX_GTK_VER="3.0"
 
-inherit cmake-utils desktop eutils toolchain-funcs wxwidgets
+inherit cmake-utils desktop optfeature toolchain-funcs wxwidgets
 
 DESCRIPTION="Interconverts file formats used in molecular modeling"
 HOMEPAGE="http://openbabel.org/wiki/Main_Page"

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
index 410d0c89fe0..6f60a5ab135 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
@@ -5,7 +5,7 @@ EAPI=6
 
 WX_GTK_VER="3.0"
 
-inherit cmake-utils eutils toolchain-funcs wxwidgets
+inherit cmake-utils optfeature toolchain-funcs wxwidgets
 
 DESCRIPTION="Interconverts file formats used in molecular modeling"
 HOMEPAGE="http://openbabel.sourceforge.net/"


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2019-09-29 11:26 Pacho Ramos
  0 siblings, 0 replies; 30+ messages in thread
From: Pacho Ramos @ 2019-09-29 11:26 UTC (permalink / raw
  To: gentoo-commits

commit:     23e15c4c2d4ef0352a77c96a7aca963cd621372d
Author:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 29 11:26:27 2019 +0000
Commit:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Sep 29 11:26:41 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=23e15c4c

sci-chemistry/openbabel: Fix openmp support, add a desktop file.

Closes: https://bugs.gentoo.org/659148
Package-Manager: Portage-2.3.76, Repoman-2.3.17
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>

 sci-chemistry/openbabel/Manifest                  |   1 +
 sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild | 101 ++++++++++++++++++++++
 2 files changed, 102 insertions(+)

diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest
index ac268758e8c..b22751d4a86 100644
--- a/sci-chemistry/openbabel/Manifest
+++ b/sci-chemistry/openbabel/Manifest
@@ -1 +1,2 @@
 DIST openbabel-2.4.1.tar.gz 11618304 BLAKE2B 8fc051e83add9be6456e281a109bd6bbec282a64ffc83309819f0decbf167b4914fbb7f1966e95e103f268754045b804317f51c79a952ace707c6af2bd320125 SHA512 427e678f0a911bd27b9a8a05e60b6e09f113be4e5dd180daaf80c28d06368e52b57501261755ab3817a8d31f2754db24471fd0ceee706d029386d6f70800e9c6
+DIST openbabel.png 29060 BLAKE2B 8d217d92125cc73462437411dd4e0cc05179cb0934f5ed15a307acc6b549b8ebab250a48a05ef7657f48c6df394f37da9b659de61efb1477b79b573a5b393ad3 SHA512 bbcaaa37663b526c9038ccb9edaf05ccc3ad1a861739a737f05f363098d8402a10b36e341fcc0aca636e809c6c32db99bf987b41719a0c756bf5e31444d3eb70

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
new file mode 100644
index 00000000000..0834c411ef2
--- /dev/null
+++ b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
@@ -0,0 +1,101 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+WX_GTK_VER="3.0"
+
+inherit cmake-utils desktop eutils wxwidgets
+
+DESCRIPTION="Interconverts file formats used in molecular modeling"
+HOMEPAGE="http://openbabel.org/wiki/Main_Page"
+SRC_URI="
+	mirror://sourceforge/openbabel/${P}.tar.gz
+	https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png
+"
+
+# See src/CMakeLists.txt for LIBRARY_VERSION
+SLOT="0/5.0.0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+IUSE="doc openmp test wxwidgets"
+
+RDEPEND="
+	dev-cpp/eigen:3
+	dev-libs/libxml2:2
+	sci-libs/inchi
+	sys-libs/zlib
+	wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-util/cmake-2.4.8
+	doc? ( app-doc/doxygen )
+"
+
+DOCS=( AUTHORS NEWS.md README.md THANKS doc/dioxin.{inc,mol2} doc/README.{dioxin.pov,povray} )
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-2.3.2-gcc-6_and_7-backport.patch
+	"${FILESDIR}"/${P}-gcc-8.patch
+)
+
+pkg_setup() {
+	if use openmp; then
+		if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+			ewarn "OpenMP is not available in your current selected gcc"
+			die "need openmp capable gcc"
+		fi
+		FORTRAN_NEED_OPENMP=1
+	fi
+}
+
+src_prepare() {
+	sed \
+		-e '/__GNUC__/s:== 4:>= 4:g' \
+		-i include/openbabel/shared_ptr.h || die
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+	use wxwidgets && setup-wxwidgets
+	local mycmakeargs=(
+		-DOPENBABEL_USE_SYSTEM_INCHI=ON
+		-DENABLE_OPENMP=$(usex openmp)
+		-DBUILD_GUI=$(usex wxwidgets)
+	)
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	docinto html
+	dodoc doc/{*.html,*.png}
+	if use doc ; then
+		docinto html/API
+		dodoc -r doc/API/html/*
+	fi
+
+	make_desktop_entry obgui "Open Babel" "${PN}"
+	doicon "${DISTDIR}/${PN}.png"
+
+	cmake-utils_src_install
+}
+
+src_test() {
+	local mycmakeargs=(
+		-DOPENBABEL_USE_SYSTEM_INCHI=ON
+		-DPYTHON_EXECUTABLE=false
+		-DOPENMP=$(usex openmp)
+		-DBUILD_GUI=$(usex wxwidgets)
+		-DTESTS=$(usex test)
+	)
+
+	cmake-utils_src_configure
+	cmake-utils_src_compile
+	cmake-utils_src_test -E py
+}
+
+pkg_postinst() {
+	optfeature "perl support" sci-chemistry/openbabel-perl
+	optfeature "python support" sci-chemistry/openbabel-python
+}


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2017-10-05 12:05 Michael Palimaka
  0 siblings, 0 replies; 30+ messages in thread
From: Michael Palimaka @ 2017-10-05 12:05 UTC (permalink / raw
  To: gentoo-commits

commit:     3b2cd1ee6422df5817256d28327481dab713bef1
Author:     Michael Palimaka <kensington <AT> gentoo <DOT> org>
AuthorDate: Thu Oct  5 11:40:22 2017 +0000
Commit:     Michael Palimaka <kensington <AT> gentoo <DOT> org>
CommitDate: Thu Oct  5 12:04:46 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3b2cd1ee

sci-chemistry/openbabel: stabilise 2.4.1 for x86

Bug: https://bugs.gentoo.org/625088
Package-Manager: Portage-2.3.8, Repoman-2.3.3

 sci-chemistry/openbabel/openbabel-2.4.1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
index 2dac86457a9..3719af8c81d 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/5.0.0"
 LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 
 RDEPEND="


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2017-09-12 22:58 Matt Turner
  0 siblings, 0 replies; 30+ messages in thread
From: Matt Turner @ 2017-09-12 22:58 UTC (permalink / raw
  To: gentoo-commits

commit:     ea41fae35204ea14f0ade85b027f11af10d5c31a
Author:     Matt Turner <mattst88 <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 12 22:47:04 2017 +0000
Commit:     Matt Turner <mattst88 <AT> gentoo <DOT> org>
CommitDate: Tue Sep 12 22:58:18 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ea41fae3

sci-chemistry/openbabel-2.4.1: dropped ppc keywords, bug 625088

 sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild | 2 +-
 sci-chemistry/openbabel/openbabel-2.4.1.ebuild    | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
index f84e2a1f51b..9665a2ffebc 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
@@ -13,7 +13,7 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 
 RDEPEND="

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
index ca1fa0dda3c..2dac86457a9 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/5.0.0"
 LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 
 RDEPEND="


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2017-07-31 11:36 Tobias Klausmann
  0 siblings, 0 replies; 30+ messages in thread
From: Tobias Klausmann @ 2017-07-31 11:36 UTC (permalink / raw
  To: gentoo-commits

commit:     b6053500dff2e5a57f46a8a7b13158eb64240e7c
Author:     Tobias Klausmann <klausman <AT> gentoo <DOT> org>
AuthorDate: Mon Jul 31 11:05:18 2017 +0000
Commit:     Tobias Klausmann <klausman <AT> gentoo <DOT> org>
CommitDate: Mon Jul 31 11:36:43 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b6053500

sci-chemistry/openbabel-2.4.1-r0: amd64 stable

Gentoo-Bug: 625088

 sci-chemistry/openbabel/openbabel-2.4.1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
index 2e3c423900e..ca1fa0dda3c 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
 # See src/CMakeLists.txt for LIBRARY_VERSION
 SLOT="0/5.0.0"
 LICENSE="GPL-2"
-KEYWORDS="~amd64 ~arm ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 
 RDEPEND="


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2017-06-03  8:39 Justin Lecher
  0 siblings, 0 replies; 30+ messages in thread
From: Justin Lecher @ 2017-06-03  8:39 UTC (permalink / raw
  To: gentoo-commits

commit:     d789a02141117aef88ba55d035f11d3127dd35db
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jun  3 08:04:03 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun  3 08:39:45 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d789a021

sci-chemistry/openbabel: Fix API doc installation

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=619140
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.4.1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
index 7674873aea9..2e3c423900e 100644
--- a/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.4.1.ebuild
@@ -66,7 +66,7 @@ src_install() {
 	dodoc doc/{*.html,*.png}
 	if use doc ; then
 		docinto html/API
-		dodoc doc/API/html/*
+		dodoc -r doc/API/html/*
 	fi
 
 	cmake-utils_src_install


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2015-11-07  9:09 Justin Lecher
  0 siblings, 0 replies; 30+ messages in thread
From: Justin Lecher @ 2015-11-07  9:09 UTC (permalink / raw
  To: gentoo-commits

commit:     19635979086a95d6217c86024312653b20d503f9
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Nov  7 09:09:46 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Nov  7 09:09:56 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=19635979

sci-chemistry/openbabel: Only configure WxGtk with USE=wxwidgets

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=565040

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
index d1c0813..bbb38de 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
@@ -49,7 +49,7 @@ src_prepare() {
 }
 
 src_configure() {
-	need-wxwidgets unicode
+	use wxwidgets && need-wxwidgets unicode
 	local mycmakeargs=()
 	mycmakeargs+=(
 		-DOPENBABEL_USE_SYSTEM_INCHI=ON


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2015-11-04 15:17 Agostino Sarubbo
  0 siblings, 0 replies; 30+ messages in thread
From: Agostino Sarubbo @ 2015-11-04 15:17 UTC (permalink / raw
  To: gentoo-commits

commit:     d1d1c34f97099b66cd661fa058a67cc8aff4942e
Author:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Wed Nov  4 15:17:15 2015 +0000
Commit:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Wed Nov  4 15:17:15 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d1d1c34f

sci-chemistry/openbabel: ppc stable wrt bug #564280

Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="ppc"

 sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
index c791532..d1c0813 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 
 RDEPEND="


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2015-11-01 13:49 Mikle Kolyada
  0 siblings, 0 replies; 30+ messages in thread
From: Mikle Kolyada @ 2015-11-01 13:49 UTC (permalink / raw
  To: gentoo-commits

commit:     65dfb12e9cd7c91a1269359cd2079c44bf2e1e57
Author:     Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Sun Nov  1 13:46:58 2015 +0000
Commit:     Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Sun Nov  1 13:46:58 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=65dfb12e

sci-chemistry/openbabel: x86 stable wrt bug #564280

Package-Manager: portage-2.2.20.1

 sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
index d0a1a1d..c791532 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 
 RDEPEND="


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2015-10-30  9:18 Agostino Sarubbo
  0 siblings, 0 replies; 30+ messages in thread
From: Agostino Sarubbo @ 2015-10-30  9:18 UTC (permalink / raw
  To: gentoo-commits

commit:     c02f6a393640e5e845c121174c46e59dd621b4a3
Author:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 30 09:17:43 2015 +0000
Commit:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Fri Oct 30 09:17:43 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c02f6a39

sci-chemistry/openbabel: amd64 stable wrt bug #564280

Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="amd64"

 sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
index 81b5302..d0a1a1d 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
-KEYWORDS="~amd64 ~arm ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~arm ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 IUSE="doc openmp test wxwidgets"
 
 RDEPEND="


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2015-10-27 18:04 Justin Lecher
  0 siblings, 0 replies; 30+ messages in thread
From: Justin Lecher @ 2015-10-27 18:04 UTC (permalink / raw
  To: gentoo-commits

commit:     67637da7accee22cb299954e4aaa831fe2d6faec
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 27 17:37:08 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Oct 27 18:04:04 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=67637da7

sci-chemistry/openbabel: Fix for gcc-5

convert mycmakeargs to be an array

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild | 14 +++++++++++---
 1 file changed, 11 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
index c123bb0..81b5302 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
@@ -41,13 +41,21 @@ pkg_setup() {
 	fi
 }
 
+src_prepare() {
+	sed \
+		-e '/__GNUC__/s:== 4:>= 4:g' \
+		-i include/openbabel/shared_ptr.h || die
+	cmake-utils_src_prepare
+}
+
 src_configure() {
 	need-wxwidgets unicode
-	local mycmakeargs=""
-	mycmakeargs="${mycmakeargs}
+	local mycmakeargs=()
+	mycmakeargs+=(
 		-DOPENBABEL_USE_SYSTEM_INCHI=ON
 		$(cmake-utils_use_enable openmp OPENMP)
-		$(cmake-utils_use wxwidgets BUILD_GUI)"
+		$(cmake-utils_use wxwidgets BUILD_GUI)
+	)
 
 	cmake-utils_src_configure
 }


^ permalink raw reply related	[flat|nested] 30+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/
@ 2015-10-25 10:31 Pacho Ramos
  0 siblings, 0 replies; 30+ messages in thread
From: Pacho Ramos @ 2015-10-25 10:31 UTC (permalink / raw
  To: gentoo-commits

commit:     036d3d0888dd26fd1e1be3bf21ef96a934374390
Author:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 25 10:31:33 2015 +0000
Commit:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Oct 25 10:31:33 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=036d3d08

sci-chemistry/openbabel: Support wxGTK:3.0

Package-Manager: portage-2.2.23

 sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild | 82 +++++++++++++++++++++++
 1 file changed, 82 insertions(+)

diff --git a/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
new file mode 100644
index 0000000..c123bb0
--- /dev/null
+++ b/sci-chemistry/openbabel/openbabel-2.3.2-r1.ebuild
@@ -0,0 +1,82 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+WX_GTK_VER="3.0"
+
+inherit cmake-utils eutils wxwidgets
+
+DESCRIPTION="Interconverts file formats used in molecular modeling"
+HOMEPAGE="http://openbabel.sourceforge.net/"
+SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~arm ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+IUSE="doc openmp test wxwidgets"
+
+RDEPEND="
+	dev-cpp/eigen:3
+	dev-libs/libxml2:2
+	sci-libs/inchi
+	sys-libs/zlib
+	wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )"
+DEPEND="${RDEPEND}
+	>=dev-util/cmake-2.4.8
+	doc? ( app-doc/doxygen )"
+
+DOCS="AUTHORS ChangeLog NEWS README THANKS doc/*.inc doc/README* doc/*.mol2"
+
+PATCHES=( "${FILESDIR}"/${P}-test_lib_path.patch )
+
+pkg_setup() {
+	if use openmp; then
+		if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+			ewarn "OpenMP is not available in your current selected gcc"
+			die "need openmp capable gcc"
+		fi
+		FORTRAN_NEED_OPENMP=1
+	fi
+}
+
+src_configure() {
+	need-wxwidgets unicode
+	local mycmakeargs=""
+	mycmakeargs="${mycmakeargs}
+		-DOPENBABEL_USE_SYSTEM_INCHI=ON
+		$(cmake-utils_use_enable openmp OPENMP)
+		$(cmake-utils_use wxwidgets BUILD_GUI)"
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	dohtml doc/{*.html,*.png}
+	if use doc ; then
+		insinto /usr/share/doc/${PF}/API/html
+		doins doc/API/html/*
+	fi
+
+	cmake-utils_src_install
+}
+
+src_test() {
+	local mycmakeargs=""
+	mycmakeargs="${mycmakeargs}
+		-DOPENBABEL_USE_SYSTEM_INCHI=ON
+		-DPYTHON_EXECUTABLE=false
+		$(cmake-utils_use_enable openmp OPENMP)
+		$(cmake-utils_use wxwidgets BUILD_GUI)
+		$(cmake-utils_use_enable test TESTS)"
+
+	cmake-utils_src_configure
+	cmake-utils_src_compile
+	cmake-utils_src_test -E py
+}
+
+pkg_postinst() {
+	optfeature "perl support" sci-chemistry/openbabel-perl
+	optfeature "python support" sci-chemistry/openbabel-python
+}


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