[gentoo-commits] proj/sci:master commit in: sci-biology/IMAGE/

[gentoo-commits] proj/sci:master commit in: sci-biology/IMAGE/

[Martin Mokrejs]

commit:     a649e310a506dca97629e19c854c861bffce5ef4
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 21:03:26 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 21:03:26 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a649e310

sci-biology/IMAGE: a skeleton for a new package

---
 sci-biology/IMAGE/ChangeLog          | 10 ++++++++++
 sci-biology/IMAGE/IMAGE-2.4.1.ebuild | 19 +++++++++++++++++++
 sci-biology/IMAGE/metadata.xml       |  9 +++++++++
 3 files changed, 38 insertions(+)

diff --git a/sci-biology/IMAGE/ChangeLog b/sci-biology/IMAGE/ChangeLog
new file mode 100644
index 0000000..2c9bcae
--- /dev/null
+++ b/sci-biology/IMAGE/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/IMAGE
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*IMAGE-2.4.1 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +IMAGE-2.4.1.ebuild, +metadata.xml:
+  a skeleton for a new package
+

diff --git a/sci-biology/IMAGE/IMAGE-2.4.1.ebuild b/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
new file mode 100644
index 0000000..7b6f8dc
--- /dev/null
+++ b/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Iterative Mapping and Assembly for Gap Elimination - close gaps in assemblies using Illumina paired end reads"
+HOMEPAGE="https://sourceforge.net/apps/mediawiki/image2"
+SRC_URI="http://sourceforge.net/projects/image2/files/IMAGE_version2.4.1_64bit.zip"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+# contains bundled binaries:
+# nucmer smalt_x86_64 ssaha2 ssaha2Build velvetg velveth
+DEPEND=""
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/IMAGE/metadata.xml b/sci-biology/IMAGE/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/IMAGE/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/IMAGE/

[Christoph Junghans]

commit:     19b2cebdcd334b24b4b41cb806ce4f30655e8891
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 02:47:31 2014 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 02:47:31 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=19b2cebd

added license

Package-Manager: portage-2.2.8-r1

---
 sci-biology/IMAGE/ChangeLog          | 4 +++-
 sci-biology/IMAGE/IMAGE-2.4.1.ebuild | 5 +++--
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/sci-biology/IMAGE/ChangeLog b/sci-biology/IMAGE/ChangeLog
index 2c9bcae..fa3741c 100644
--- a/sci-biology/IMAGE/ChangeLog
+++ b/sci-biology/IMAGE/ChangeLog
@@ -2,9 +2,11 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> IMAGE-2.4.1.ebuild:
+  added license
+
 *IMAGE-2.4.1 (23 Mar 2014)
 
   23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
   +IMAGE-2.4.1.ebuild, +metadata.xml:
   a skeleton for a new package
-

diff --git a/sci-biology/IMAGE/IMAGE-2.4.1.ebuild b/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
index 7b6f8dc..76e1354 100644
--- a/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
+++ b/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
@@ -4,11 +4,12 @@
 
 EAPI=5
 
-DESCRIPTION="Iterative Mapping and Assembly for Gap Elimination - close gaps in assemblies using Illumina paired end reads"
+DESCRIPTION="Iterative Mapping and Assembly for Gap Elimination"
 HOMEPAGE="https://sourceforge.net/apps/mediawiki/image2"
 SRC_URI="http://sourceforge.net/projects/image2/files/IMAGE_version2.4.1_64bit.zip"
 
-LICENSE=""
+#http://genomebiology.com/2010/11/4/R41
+LICENSE="CC-BY-2.0"
 SLOT="0"
 KEYWORDS=""
 IUSE=""

[gentoo-commits] proj/sci:master commit in: sci-biology/IMAGE/

[Martin Mokrejs]

commit:     02c5a466a34761f0fe9ae74f5b3c6fb7b4d188a2
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Oct 27 10:00:46 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Oct 27 10:00:46 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=02c5a466

sci-biology/IMAGE: improve package descr

Package-Manager: portage-2.2.18

 sci-biology/IMAGE/ChangeLog          | 5 ++++-
 sci-biology/IMAGE/IMAGE-2.4.1.ebuild | 4 ++--
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/sci-biology/IMAGE/ChangeLog b/sci-biology/IMAGE/ChangeLog
index 8c16957..f221aba 100644
--- a/sci-biology/IMAGE/ChangeLog
+++ b/sci-biology/IMAGE/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-biology/IMAGE
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Id$
 
+  27 Oct 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> IMAGE-2.4.1.ebuild:
+  sci-biology/IMAGE: improve package descr
+
   16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> IMAGE-2.4.1.ebuild:
   added license
 

diff --git a/sci-biology/IMAGE/IMAGE-2.4.1.ebuild b/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
index 227f1a7..c97aa09 100644
--- a/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
+++ b/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
 EAPI=5
 
-DESCRIPTION="Iterative Mapping and Assembly for Gap Elimination"
+DESCRIPTION="Iterative Mapping and Assembly for Gap Elimination using paired-end Illumina"
 HOMEPAGE="https://sourceforge.net/apps/mediawiki/image2"
 SRC_URI="http://sourceforge.net/projects/image2/files/IMAGE_version2.4.1_64bit.zip"
 

[gentoo-commits] proj/sci:master commit in: sci-biology/IMAGE/

[Andrew Ammerlaan]

commit:     0d3bcfe0b483f30211d75bf26dd76d19f307e5f1
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 16:11:00 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 16:11:00 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=0d3bcfe0

sci-biology/IMAGE: bdepend on unzip

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/IMAGE/IMAGE-2.4.1.ebuild | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sci-biology/IMAGE/IMAGE-2.4.1.ebuild b/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
index 6bd80436e..df06eb8eb 100644
--- a/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
+++ b/sci-biology/IMAGE/IMAGE-2.4.1.ebuild
@@ -18,6 +18,7 @@ KEYWORDS="~amd64"
 # nucmer smalt_x86_64 ssaha2 ssaha2Build velvetg velveth
 DEPEND=""
 RDEPEND="${DEPEND}"
+BDEPEND="app-arch/unzip"
 
 S="${WORKDIR}/${PN}_version2.4"