[gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/

["Justin Lecher" <jlec@gentoo.org>]

commit:     b1a4cd1ee04901d7a7b590ef1abcd4475782f8c2
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 23 11:00:54 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Oct 23 11:00:54 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b1a4cd1e

sci-chemistry/talosn: Version Bump

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 .../talosn/talosn-4.12.2015.147.15.40.ebuild       | 68 ++++++++++++++++++++++
 1 file changed, 68 insertions(+)

diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
new file mode 100644
index 0000000..f28e0fb
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+DEPEND=">=virtual/jre-1.5:*"
+RDEPEND="${DEPEND}
+	app-shells/tcsh
+	sci-biology/ncbi-tools"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+	local s64
+	use amd64 || s64="_x64"
+	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+
+	sed \
+		-e '/setenv TALOSN_DIR/d' \
+		-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
+		-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
+		-i talosn_ss || die
+}
+
+src_install() {
+	local TALOSN="/opt/${PN}"
+	exeinto ${TALOSN}/bin
+	doexe bin/*
+
+	exeinto ${TALOSN}/com
+	doexe com/*
+
+	exeinto /opt/bin
+	doexe talosn{,_ss}
+
+	insinto ${TALOSN}
+	doins -r tab
+
+	java-pkg_jarinto ${TALOSN}
+	java-pkg_dojar rama.jar
+
+	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r demo
+	fi
+
+	cat >> "${T}"/40talosn <<- EOF
+	TALOSN_DIR="${EPREFIX}/${TALOSN}"
+	#BLASTDB=
+	EOF
+	doenvd "${T}"/40talosn
+}