* [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/
@ 2011-07-30 12:55 Martin Mokrejs
0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2011-07-30 12:55 UTC (permalink / raw
To: gentoo-commits
commit: 73f28443211e5c078772c8eced7e433746e6ae9c
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jul 30 12:54:25 2011 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jul 30 12:54:25 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=73f28443
backbone of a new package, should probably use a lot of stuff from ncbi-tools++ ebuild
(Portage version: 2.1.10.7/git/Linux i686, unsigned Manifest commit)
---
sci-biology/gbench/ChangeLog | 11 ++++++
sci-biology/gbench/gbench-2.3.2.ebuild | 55 ++++++++++++++++++++++++++++++++
sci-biology/gbench/metadata.xml | 5 +++
3 files changed, 71 insertions(+), 0 deletions(-)
diff --git a/sci-biology/gbench/ChangeLog b/sci-biology/gbench/ChangeLog
new file mode 100644
index 0000000..00fb7d5
--- /dev/null
+++ b/sci-biology/gbench/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/gbench
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*gbench-2.3.2 (30 Jul 2011)
+
+ 30 Jul 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +gbench-2.3.2.ebuild, +metadata.xml:
+ backbone of a new package, should probably use a lot of stuff from
+ ncbi-tools++ ebuild
+
diff --git a/sci-biology/gbench/gbench-2.3.2.ebuild b/sci-biology/gbench/gbench-2.3.2.ebuild
new file mode 100644
index 0000000..e9bf5b5
--- /dev/null
+++ b/sci-biology/gbench/gbench-2.3.2.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit wxwidgets
+
+DESCRIPTION="View and analyze genome sequences"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/"
+SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-2.3.2/gbench-src-"${PV}".tgz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS=""
+#KEYWORDS="~amd64 ~x86"
+IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi"
+
+DEPEND="sys-fs/fuse
+ app-arch/bzip2
+ dev-libs/lzo
+ pcre? ( dev-libs/libpcre )
+ net-libs/gnutls
+ ssl? ( dev-libs/openssl )
+ sybase-ct? ( dev-db/freetds )
+ mysql? ( virtual/mysql )
+ sys-libs/db
+ dev-lang/python
+ dev-libs/boost
+ virtual/opengl
+ virtual/glut
+ media-libs/glew
+ x11-libs/wxGTK
+ dev-libs/icu
+ dev-libs/expat
+ app-text/sablotron
+ xml? ( dev-libs/libxml2 )
+ dev-libs/libxslt
+ sqlite? ( dev-db/sqlite:3 )
+ sci-libs/hdf5
+ media-libs/tiff
+ media-libs/giflib
+ xpm? ( x11-libs/libXpm
+ virtual/jpeg
+ media-libs/libpng sys-libs/zlib )
+ media-libs/freetype
+ x11-libs/fltk
+ dev-libs/xerces-c
+ dev-libs/xalan-c
+ dev-cpp/muParser
+ dev-util/cppunit"
+
+RDEPEND="${DEPEND}"
+
+# ensure in src_compile no --mandir=/usr/share/man is passed to configure, use the ebuild logic from ncbi-tools++
diff --git a/sci-biology/gbench/metadata.xml b/sci-biology/gbench/metadata.xml
new file mode 100644
index 0000000..d464821
--- /dev/null
+++ b/sci-biology/gbench/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/
@ 2015-09-22 8:19 Justin Lecher
0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2015-09-22 8:19 UTC (permalink / raw
To: gentoo-commits
commit: 17719e85b7765da34bada59605561f2f67868902
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 22 07:45:59 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Sep 22 07:45:59 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=17719e85
sci-biology/gbench: Bump to EAPI=5 and python eclasses
Package-Manager: portage-2.2.21
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/gbench/gbench-2.3.2.ebuild | 83 ++++++++++++++++++----------------
1 file changed, 45 insertions(+), 38 deletions(-)
diff --git a/sci-biology/gbench/gbench-2.3.2.ebuild b/sci-biology/gbench/gbench-2.3.2.ebuild
index cfb6435..abee15a 100644
--- a/sci-biology/gbench/gbench-2.3.2.ebuild
+++ b/sci-biology/gbench/gbench-2.3.2.ebuild
@@ -1,10 +1,12 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=3
+EAPI=5
-inherit wxwidgets
+PYTHON_COMPAT=( python2_7 )
+
+inherit python-single-r1 wxwidgets
DESCRIPTION="View and analyze genome sequences"
HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/"
@@ -16,40 +18,45 @@ KEYWORDS=""
#KEYWORDS="~amd64 ~x86"
IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi"
-DEPEND="sys-fs/fuse
- app-arch/bzip2
- dev-libs/lzo
- pcre? ( dev-libs/libpcre )
- net-libs/gnutls
- ssl? ( dev-libs/openssl )
- sybase-ct? ( dev-db/freetds )
- mysql? ( virtual/mysql )
- sys-libs/db
- dev-lang/python
- dev-libs/boost
- virtual/opengl
- virtual/glut
- media-libs/glew
- x11-libs/wxGTK
- dev-libs/icu
- dev-libs/expat
- app-text/sablotron
- xml? ( dev-libs/libxml2 )
- dev-libs/libxslt
- sqlite? ( dev-db/sqlite:3 )
- sci-libs/hdf5
- media-libs/tiff
- media-libs/giflib
- xpm? ( x11-libs/libXpm
- virtual/jpeg
- media-libs/libpng sys-libs/zlib )
- media-libs/freetype
- x11-libs/fltk
- dev-libs/xerces-c
- dev-libs/xalan-c
- dev-cpp/muParser
- dev-util/cppunit"
-
-RDEPEND="${DEPEND}"
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="${PYTHON_DEPS}
+ app-arch/bzip2
+ app-text/sablotron
+ dev-cpp/muParser
+ dev-libs/boost:=
+ dev-libs/expat
+ dev-libs/icu
+ dev-libs/libxslt
+ dev-libs/lzo
+ dev-libs/xalan-c
+ dev-libs/xerces-c
+ dev-util/cppunit
+ media-libs/freetype
+ media-libs/giflib
+ media-libs/glew
+ media-libs/tiff:0=
+ net-libs/gnutls
+ sci-libs/hdf5
+ sys-fs/fuse
+ sys-libs/db:*
+ virtual/glut
+ virtual/opengl
+ x11-libs/fltk
+ x11-libs/wxGTK:*
+ mysql? ( virtual/mysql )
+ pcre? ( dev-libs/libpcre )
+ sqlite? ( dev-db/sqlite:3= )
+ ssl? ( dev-libs/openssl:0= )
+ sybase-ct? ( dev-db/freetds )
+ xml? ( dev-libs/libxml2:2= )
+ xpm? (
+ x11-libs/libXpm
+ virtual/jpeg:0=
+ media-libs/libpng:0=
+ sys-libs/zlib
+ )
+"
+DEPEND="${RDEPEND}"
# ensure in src_compile no --mandir=/usr/share/man is passed to configure, use the ebuild logic from ncbi-tools++
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/
@ 2016-07-30 0:10 Martin Mokrejs
0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2016-07-30 0:10 UTC (permalink / raw
To: gentoo-commits
commit: 53b2b237392972cb1f15086dbf5145004acf38da
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jul 30 00:10:03 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jul 30 00:10:03 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=53b2b237
sci-biology/gbench: version bump; run configure; does not compile
Package-Manager: portage-2.3.0
.../{gbench-2.3.2.ebuild => gbench-2.10.7.ebuild} | 22 +++++++++++++++++-----
1 file changed, 17 insertions(+), 5 deletions(-)
diff --git a/sci-biology/gbench/gbench-2.3.2.ebuild b/sci-biology/gbench/gbench-2.10.7.ebuild
similarity index 57%
rename from sci-biology/gbench/gbench-2.3.2.ebuild
rename to sci-biology/gbench/gbench-2.10.7.ebuild
index abee15a..d205c87 100644
--- a/sci-biology/gbench/gbench-2.3.2.ebuild
+++ b/sci-biology/gbench/gbench-2.10.7.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -10,7 +10,7 @@ inherit python-single-r1 wxwidgets
DESCRIPTION="View and analyze genome sequences"
HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/"
-SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-2.3.2/gbench-src-"${PV}".tgz"
+SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz"
LICENSE="public-domain"
SLOT="0"
@@ -34,13 +34,13 @@ RDEPEND="${PYTHON_DEPS}
dev-util/cppunit
media-libs/freetype
media-libs/giflib
- media-libs/glew
+ media-libs/glew:=
media-libs/tiff:0=
net-libs/gnutls
sci-libs/hdf5
sys-fs/fuse
sys-libs/db:*
- virtual/glut
+ virtual/glu
virtual/opengl
x11-libs/fltk
x11-libs/wxGTK:*
@@ -59,4 +59,16 @@ RDEPEND="${PYTHON_DEPS}
"
DEPEND="${RDEPEND}"
-# ensure in src_compile no --mandir=/usr/share/man is passed to configure, use the ebuild logic from ncbi-tools++
+# recycle ebuild logic from ncbi-tools++
+
+S="${WORKDIR}"/gbench-src-"${PV}"
+
+src_configure(){
+ # configure: error: --mandir=/usr/share/man: unknown option; use --help to show usage
+ # configure: error: --infodir=/usr/share/info: unknown option; use --help to show usage
+ # configure: error: --datadir=/usr/share: unknown option; use --help to show usage
+ # configure: error: --sysconfdir=/etc: unknown option; use --help to show usage
+ # configure: error: --localstatedir=/var/lib: unknown option; use --help to show usage
+ ./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" --libdir="${EPREFIX}/usr/$(get_libdir)" CC="$(tc-getCC)" \
+ CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || die
+}
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/
@ 2016-08-01 11:24 Martin Mokrejs
0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2016-08-01 11:24 UTC (permalink / raw
To: gentoo-commits
commit: cb2b14b80b24e7055352ec9a1941e20d48cc1dd9
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Aug 1 11:24:03 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Aug 1 11:24:03 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cb2b14b8
sci-biology/gbench: add media-libs/ftgl to deps
Package-Manager: portage-2.3.0
sci-biology/gbench/gbench-2.10.7.ebuild | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-biology/gbench/gbench-2.10.7.ebuild b/sci-biology/gbench/gbench-2.10.7.ebuild
index d205c87..499624b 100644
--- a/sci-biology/gbench/gbench-2.10.7.ebuild
+++ b/sci-biology/gbench/gbench-2.10.7.ebuild
@@ -40,8 +40,9 @@ RDEPEND="${PYTHON_DEPS}
sci-libs/hdf5
sys-fs/fuse
sys-libs/db:*
- virtual/glu
- virtual/opengl
+ glut? ( virtual/glu )
+ opengl? ( virtual/opengl
+ media-libs/ftgl )
x11-libs/fltk
x11-libs/wxGTK:*
mysql? ( virtual/mysql )
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/
@ 2016-09-23 17:34 Martin Mokrejs
0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2016-09-23 17:34 UTC (permalink / raw
To: gentoo-commits
commit: a634e3d0f617d8800f0c0589342cfc866f9f28d8
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Sep 23 17:34:07 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Sep 23 17:34:07 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a634e3d0
sci-biology/gbench: add more USE flags
Package-Manager: portage-2.3.0
sci-biology/gbench/gbench-2.10.7.ebuild | 13 +++++++------
1 file changed, 7 insertions(+), 6 deletions(-)
diff --git a/sci-biology/gbench/gbench-2.10.7.ebuild b/sci-biology/gbench/gbench-2.10.7.ebuild
index 499624b..9f00a3d 100644
--- a/sci-biology/gbench/gbench-2.10.7.ebuild
+++ b/sci-biology/gbench/gbench-2.10.7.ebuild
@@ -28,22 +28,23 @@ RDEPEND="${PYTHON_DEPS}
dev-libs/expat
dev-libs/icu
dev-libs/libxslt
- dev-libs/lzo
+ lzo? ( dev-libs/lzo )
dev-libs/xalan-c
dev-libs/xerces-c
dev-util/cppunit
media-libs/freetype
media-libs/giflib
- media-libs/glew:=
media-libs/tiff:0=
- net-libs/gnutls
- sci-libs/hdf5
+ gnutls? ( net-libs/gnutls )
+ hdf5? ( sci-libs/hdf5 )
sys-fs/fuse
- sys-libs/db:*
+ berkdb? ( >=sys-libs/db-4.3:* )
glut? ( virtual/glu )
opengl? ( virtual/opengl
- media-libs/ftgl )
+ media-libs/ftgl
+ media-libs/glew:= )
x11-libs/fltk
+ >=x11-libs/gtk+-2:*
x11-libs/wxGTK:*
mysql? ( virtual/mysql )
pcre? ( dev-libs/libpcre )
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/
@ 2017-02-27 10:51 Martin Mokrejs
0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2017-02-27 10:51 UTC (permalink / raw
To: gentoo-commits
commit: 8cc84f42dc0f980df53ef795597193ef0a75e9c1
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Feb 27 10:51:29 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Feb 27 10:51:29 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8cc84f42
sci-biology/gbench: version bump
Does not compile for me like previous 2.10.7, upstream contacted
In file included from gbench-src-2.11.7/src/gui/opengl/glutbitmap.h:15:0,
from gbench-src-2.11.7/src/gui/opengl/ncbi_12x24.c:4:
gbench-src-2.11.7/include/gui/opengl.h:59:23: error: unknown type name 'GLEWContext'
NCBI_GUIOPENGL_EXPORT GLEWContext* glewGetContext();
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/gbench/{gbench-2.10.7.ebuild => gbench-2.11.7.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/gbench/gbench-2.10.7.ebuild b/sci-biology/gbench/gbench-2.11.7.ebuild
similarity index 97%
rename from sci-biology/gbench/gbench-2.10.7.ebuild
rename to sci-biology/gbench/gbench-2.11.7.ebuild
index 48e7f9d68..2e3776202 100644
--- a/sci-biology/gbench/gbench-2.10.7.ebuild
+++ b/sci-biology/gbench/gbench-2.11.7.ebuild
@@ -79,7 +79,7 @@ src_configure(){
# Doh, it runs git during configure phase if it could not find NCBI SRA VDB
# by executing ./scripts/common/add_vdb.sh which points to https://github.com/ncbi/ncbi-vdb
# But, we already have sci-biology/sra_sdk which blocks sci-biology/ncbi-tools++
-# as some file overlap. Seems ncbi-vdb is yet another smaller subset of either
+# as some files overlap. Seems ncbi-vdb is yet another smaller subset of either
# of the two?
#
# Same come checking out ncbi-vdb should be in ncbi-tools++-18.0.0 .
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/
@ 2017-11-16 9:22 Martin Mokrejs
0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2017-11-16 9:22 UTC (permalink / raw
To: gentoo-commits
commit: cc7055c5a7c6aef837eba932c95ec09dbe05b196
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Nov 16 09:22:06 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Nov 16 09:22:06 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc7055c5
sci-biology/gbench: add missing SLOT
Package-Manager: Portage-2.3.13, Repoman-2.3.3
sci-biology/gbench/gbench-2.11.7.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/gbench/gbench-2.11.7.ebuild b/sci-biology/gbench/gbench-2.11.7.ebuild
index 2e3776202..58631ce43 100644
--- a/sci-biology/gbench/gbench-2.11.7.ebuild
+++ b/sci-biology/gbench/gbench-2.11.7.ebuild
@@ -37,7 +37,7 @@ RDEPEND="${PYTHON_DEPS}
|| ( sci-biology/ncbi-tools++ sci-biology/sra_sdk )
gnutls? ( net-libs/gnutls )
hdf5? ( sci-libs/hdf5 )
- sys-fs/fuse
+ sys-fs/fuse:=
berkdb? ( >=sys-libs/db-4.3:* )
glut? ( virtual/glu )
opengl? ( virtual/opengl
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/
@ 2018-10-27 12:32 Justin Lecher
0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2018-10-27 12:32 UTC (permalink / raw
To: gentoo-commits
commit: e13c803fe9c9c8917720bf5d2e499bc2086c07b3
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Oct 27 12:32:32 2018 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Oct 27 12:32:32 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e13c803f
Drop broken package
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/gbench/gbench-2.11.7.ebuild | 89 ---------------------------------
sci-biology/gbench/metadata.xml | 8 ---
2 files changed, 97 deletions(-)
diff --git a/sci-biology/gbench/gbench-2.11.7.ebuild b/sci-biology/gbench/gbench-2.11.7.ebuild
deleted file mode 100644
index 58631ce43..000000000
--- a/sci-biology/gbench/gbench-2.11.7.ebuild
+++ /dev/null
@@ -1,89 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-single-r1 wxwidgets
-
-DESCRIPTION="View and analyze genome sequences"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/"
-SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz"
-
-LICENSE="public-domain"
-SLOT="0"
-KEYWORDS=""
-#KEYWORDS="~amd64 ~x86"
-IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
- app-arch/bzip2
- app-text/sablotron
- dev-cpp/muParser
- dev-libs/boost:=
- dev-libs/expat
- dev-libs/icu
- dev-libs/libxslt
- lzo? ( dev-libs/lzo )
- dev-libs/xalan-c
- dev-libs/xerces-c
- dev-util/cppunit
- media-libs/freetype
- media-libs/giflib
- media-libs/tiff:0=
- || ( sci-biology/ncbi-tools++ sci-biology/sra_sdk )
- gnutls? ( net-libs/gnutls )
- hdf5? ( sci-libs/hdf5 )
- sys-fs/fuse:=
- berkdb? ( >=sys-libs/db-4.3:* )
- glut? ( virtual/glu )
- opengl? ( virtual/opengl
- media-libs/ftgl
- media-libs/glew:= )
- x11-libs/fltk
- >=x11-libs/gtk+-2:*
- x11-libs/wxGTK:*
- mysql? ( virtual/mysql )
- pcre? ( dev-libs/libpcre )
- sqlite? ( dev-db/sqlite:3= )
- ssl? ( dev-libs/openssl:0= )
- sybase-ct? ( dev-db/freetds )
- xml? ( dev-libs/libxml2:2= )
- xpm? (
- x11-libs/libXpm
- virtual/jpeg:0=
- media-libs/libpng:0=
- sys-libs/zlib
- )
-"
-DEPEND="${RDEPEND}"
-
-# recycle ebuild logic from ncbi-tools++
-
-S="${WORKDIR}"/gbench-src-"${PV}"
-
-src_configure(){
- # configure: error: --mandir=/usr/share/man: unknown option; use --help to show usage
- # configure: error: --infodir=/usr/share/info: unknown option; use --help to show usage
- # configure: error: --datadir=/usr/share: unknown option; use --help to show usage
- # configure: error: --sysconfdir=/etc: unknown option; use --help to show usage
- # configure: error: --localstatedir=/var/lib: unknown option; use --help to show usage
- ./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" --libdir="${EPREFIX}/usr/$(get_libdir)" \
- --without-downloaded-vdb \
- CC="$(tc-getCC)" CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || die
-}
-
-# Doh, it runs git during configure phase if it could not find NCBI SRA VDB
-# by executing ./scripts/common/add_vdb.sh which points to https://github.com/ncbi/ncbi-vdb
-# But, we already have sci-biology/sra_sdk which blocks sci-biology/ncbi-tools++
-# as some files overlap. Seems ncbi-vdb is yet another smaller subset of either
-# of the two?
-#
-# Same come checking out ncbi-vdb should be in ncbi-tools++-18.0.0 .
-#
-# That behavior is entirely optional; you can suppress it by
-# configuring the Toolkit --without-downloaded-vdb, --with-vdb=PATH (e.g.,
-# --with-vdb=/usr), or --without-vdb altogether.
diff --git a/sci-biology/gbench/metadata.xml b/sci-biology/gbench/metadata.xml
deleted file mode 100644
index 8417d1580..000000000
--- a/sci-biology/gbench/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 8+ messages in thread
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2015-09-22 8:19 [gentoo-commits] proj/sci:master commit in: sci-biology/gbench/ Justin Lecher
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2018-10-27 12:32 Justin Lecher
2017-11-16 9:22 Martin Mokrejs
2017-02-27 10:51 Martin Mokrejs
2016-09-23 17:34 Martin Mokrejs
2016-08-01 11:24 Martin Mokrejs
2016-07-30 0:10 Martin Mokrejs
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