* [gentoo-commits] proj/sci:master commit in: sci-biology/SolexaQA/
@ 2015-09-21 19:44 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-09-21 19:44 UTC (permalink / raw
To: gentoo-commits
commit: a3939940bc669ab32ffe28c50fed768db5846d36
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 19:41:36 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 19:41:36 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a3939940
sci-biology/SolexaQA: Bump to EAPI 5
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/SolexaQA/SolexaQA-2.2.ebuild | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/sci-biology/SolexaQA/SolexaQA-2.2.ebuild b/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
index 174c373..c8ed142 100644
--- a/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
+++ b/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=3
+EAPI=5
-DESCRIPTION="Analyze and trim single-end and paired-end reads, show quality statistics in figures"
+DESCRIPTION="Analyze and trim single-end and paired-end reads, show quality statistics"
HOMEPAGE="http://sourceforge.net/projects/clview"
SRC_URI="http://sourceforge.net/projects/solexaqa/files/src/SolexaQA_v.2.2.zip"
@@ -13,8 +13,9 @@ SLOT="0"
KEYWORDS="~amd64"
IUSE=""
-DEPEND="dev-lang/perl
- dev-lang/R"
+DEPEND="
+ dev-lang/perl
+ dev-lang/R"
RDEPEND="${DEPEND}"
S=${WORKDIR}/"${PN}"_v."${PV}"
^ permalink raw reply related [flat|nested] 5+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/SolexaQA/
@ 2021-03-05 18:24 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-03-05 18:24 UTC (permalink / raw
To: gentoo-commits
commit: 05b98ea22a48b62c682a2c5feda995622f5dbbd4
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 5 18:24:45 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 5 18:24:45 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=05b98ea2
sci-biology/SolexaQA: drop old
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/SolexaQA/SolexaQA-2.2.ebuild | 25 -------------------------
1 file changed, 25 deletions(-)
diff --git a/sci-biology/SolexaQA/SolexaQA-2.2.ebuild b/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
deleted file mode 100644
index ffdb98126..000000000
--- a/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="Analyze and trim single-end and paired-end reads, show quality statistics"
-HOMEPAGE="https://sourceforge.net/projects/clview"
-SRC_URI="https://sourceforge.net/projects/solexaqa/files/src/SolexaQA_v.${PV}.zip"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND="
- dev-lang/perl
- dev-lang/R
- app-arch/unzip"
-RDEPEND="${DEPEND}"
-
-S=${WORKDIR}/"${PN}"_v."${PV}"
-
-src_install(){
- dobin *.pl
-}
^ permalink raw reply related [flat|nested] 5+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/SolexaQA/
@ 2021-03-05 18:24 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-03-05 18:24 UTC (permalink / raw
To: gentoo-commits
commit: b7c5fc589ea2a2616d514bcb2b14060e52ac5f94
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 5 18:24:28 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 5 18:24:28 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b7c5fc58
sci-biology/SolexaQA: version bump 3.1.7.1
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/SolexaQA/SolexaQA-3.1.7.1.ebuild | 33 ++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/sci-biology/SolexaQA/SolexaQA-3.1.7.1.ebuild b/sci-biology/SolexaQA/SolexaQA-3.1.7.1.ebuild
new file mode 100644
index 000000000..ef0d862ef
--- /dev/null
+++ b/sci-biology/SolexaQA/SolexaQA-3.1.7.1.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit multilib
+
+DESCRIPTION="Analyze and trim single-end and paired-end reads, show quality statistics"
+HOMEPAGE="https://sourceforge.net/projects/solexaqa"
+SRC_URI="https://sourceforge.net/projects/solexaqa/files/src/SolexaQA++_v${PV}.zip"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+
+DEPEND="
+ sys-libs/zlib
+ dev-libs/boost
+"
+BDEPEND="app-arch/unzip"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/source"
+
+src_prepare() {
+ default
+ sed -i -e "s/\/lib/$(get_libdir)/g" -e "s/\/include/include\/boost/g" -e 's/-static//' makefile || die
+}
+
+src_install() {
+ newbin SolexaQA++ "${PN}"
+ einstalldocs
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/SolexaQA/
@ 2021-01-19 16:26 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-01-19 16:26 UTC (permalink / raw
To: gentoo-commits
commit: a6e5a6f5c8e8467e6a7241329bdbeeb4c7931790
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 16:11:46 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 16:11:46 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a6e5a6f5
sci-biology/SolexaQA: depend on unzip
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/SolexaQA/SolexaQA-2.2.ebuild | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-biology/SolexaQA/SolexaQA-2.2.ebuild b/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
index 3ef15d780..ffdb98126 100644
--- a/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
+++ b/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -14,7 +14,8 @@ IUSE=""
DEPEND="
dev-lang/perl
- dev-lang/R"
+ dev-lang/R
+ app-arch/unzip"
RDEPEND="${DEPEND}"
S=${WORKDIR}/"${PN}"_v."${PV}"
^ permalink raw reply related [flat|nested] 5+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/SolexaQA/
@ 2014-03-23 20:16 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2014-03-23 20:16 UTC (permalink / raw
To: gentoo-commits
commit: c9be1c3be39d65838c3fc1b18850eadd6d8cbc72
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 20:14:52 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 20:14:52 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c9be1c3b
sci-biology/SolexaQA: new package
Package-Manager: portage-2.2.7
---
sci-biology/SolexaQA/ChangeLog | 9 +++++++++
sci-biology/SolexaQA/SolexaQA-2.2.ebuild | 24 ++++++++++++++++++++++++
sci-biology/SolexaQA/metadata.xml | 9 +++++++++
3 files changed, 42 insertions(+)
diff --git a/sci-biology/SolexaQA/ChangeLog b/sci-biology/SolexaQA/ChangeLog
new file mode 100644
index 0000000..d7f490e
--- /dev/null
+++ b/sci-biology/SolexaQA/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/SolexaQA
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*SolexaQA-2.2 (23 Mar 2014)
+
+ 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +SolexaQA-2.2.ebuild, +metadata.xml:
+ sci-biology/SolexaQA: new package
diff --git a/sci-biology/SolexaQA/SolexaQA-2.2.ebuild b/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
new file mode 100644
index 0000000..a815cff
--- /dev/null
+++ b/sci-biology/SolexaQA/SolexaQA-2.2.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="Analyze and trim single-end and paired-end reads, show quality statistics in figures"
+HOMEPAGE="http://sourceforge.net/projects/clview"
+SRC_URI="http://sourceforge.net/projects/solexaqa/files/src/SolexaQA_v.2.2.zip"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="dev-lang/perl
+ dev-lang/R"
+RDEPEND="${DEPEND}"
+
+S=${WORKDIR}/"${PN}"_v."${PV}"
+
+src_install(){
+ dobin *.pl
+}
diff --git a/sci-biology/SolexaQA/metadata.xml b/sci-biology/SolexaQA/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/SolexaQA/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
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