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* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2015-09-21 17:44 Justin Lecher
  0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2015-09-21 17:44 UTC (permalink / raw
  To: gentoo-commits

commit:     b4f54a66f2201a5b4d96d6ef427f01cf556316b5
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 17:34:01 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 17:34:01 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b4f54a66

sci-chemistry/talosn: Add subslot operators

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
index 827f37d..f28e0fb 100644
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -15,7 +15,7 @@ LICENSE="all-rights-reserved"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="examples"
 
-DEPEND=">=virtual/jre-1.5"
+DEPEND=">=virtual/jre-1.5:*"
 RDEPEND="${DEPEND}
 	app-shells/tcsh
 	sci-biology/ncbi-tools"


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2021-01-18 11:33 Andrew Ammerlaan
  0 siblings, 0 replies; 7+ messages in thread
From: Andrew Ammerlaan @ 2021-01-18 11:33 UTC (permalink / raw
  To: gentoo-commits

commit:     ef081ac76fedf3af034da77298fcc1b541e2c5ec
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Jan 18 11:33:07 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Jan 18 11:33:07 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ef081ac7

sci-chemistry/talosn: fix fetch

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 .../talosn/talosn-4.01.2013.148.15.55-r3.ebuild    | 67 ----------------------
 .../talosn/talosn-4.12.2015.147.15.40.ebuild       |  9 +--
 2 files changed, 5 insertions(+), 71 deletions(-)

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
deleted file mode 100644
index d308ded66..000000000
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit java-pkg-opt-2
-
-DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
-SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
-
-SLOT="0"
-LICENSE="all-rights-reserved"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-DEPEND=">=virtual/jre-1.5:*"
-RDEPEND="${DEPEND}
-	app-shells/tcsh
-	sci-biology/ncbi-tools"
-
-S="${WORKDIR}"
-
-QA_PREBUILT="/opt/.*"
-
-src_prepare() {
-	local s64
-	use amd64 || s64="_x64"
-	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
-
-	sed \
-		-e '/setenv TALOSN_DIR/d' \
-		-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
-		-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
-		-i talosn_ss || die
-}
-
-src_install() {
-	local TALOSN="/opt/${PN}"
-	exeinto ${TALOSN}/bin
-	doexe bin/*
-
-	exeinto ${TALOSN}/com
-	doexe com/*
-
-	exeinto /opt/bin
-	doexe talosn{,_ss}
-
-	insinto ${TALOSN}
-	doins -r tab
-
-	java-pkg_jarinto ${TALOSN}
-	java-pkg_dojar rama.jar
-
-	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
-
-	if use examples; then
-		insinto /usr/share/${PN}
-		doins -r demo
-	fi
-
-	cat >> "${T}"/40talosn <<- EOF
-	TALOSN_DIR="${EPREFIX}/${TALOSN}"
-	#BLASTDB=
-	EOF
-	doenvd "${T}"/40talosn
-}

diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
index d308ded66..1fbcea875 100644
--- a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
+++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 inherit java-pkg-opt-2
 
 DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
-SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+HOMEPAGE="https://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="https://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
 
 SLOT="0"
 LICENSE="all-rights-reserved"
@@ -24,6 +24,7 @@ S="${WORKDIR}"
 QA_PREBUILT="/opt/.*"
 
 src_prepare() {
+	default
 	local s64
 	use amd64 || s64="_x64"
 	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2015-10-23 11:01 Justin Lecher
  0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2015-10-23 11:01 UTC (permalink / raw
  To: gentoo-commits

commit:     b1a4cd1ee04901d7a7b590ef1abcd4475782f8c2
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 23 11:00:54 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Oct 23 11:00:54 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b1a4cd1e

sci-chemistry/talosn: Version Bump

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 .../talosn/talosn-4.12.2015.147.15.40.ebuild       | 68 ++++++++++++++++++++++
 1 file changed, 68 insertions(+)

diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
new file mode 100644
index 0000000..f28e0fb
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+DEPEND=">=virtual/jre-1.5:*"
+RDEPEND="${DEPEND}
+	app-shells/tcsh
+	sci-biology/ncbi-tools"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+	local s64
+	use amd64 || s64="_x64"
+	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+
+	sed \
+		-e '/setenv TALOSN_DIR/d' \
+		-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
+		-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
+		-i talosn_ss || die
+}
+
+src_install() {
+	local TALOSN="/opt/${PN}"
+	exeinto ${TALOSN}/bin
+	doexe bin/*
+
+	exeinto ${TALOSN}/com
+	doexe com/*
+
+	exeinto /opt/bin
+	doexe talosn{,_ss}
+
+	insinto ${TALOSN}
+	doins -r tab
+
+	java-pkg_jarinto ${TALOSN}
+	java-pkg_dojar rama.jar
+
+	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r demo
+	fi
+
+	cat >> "${T}"/40talosn <<- EOF
+	TALOSN_DIR="${EPREFIX}/${TALOSN}"
+	#BLASTDB=
+	EOF
+	doenvd "${T}"/40talosn
+}


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2014-04-25 14:32 Justin Lecher
  0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2014-04-25 14:32 UTC (permalink / raw
  To: gentoo-commits

commit:     2baf8779cbeb05c642d0f64b059edcf4d0086a84
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 24 08:30:52 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Apr 25 08:22:52 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2baf8779

sci-chemistry/talosn: Bump due to upstream tarball change

Package-Manager: portage-2.2.10

---
 sci-chemistry/talosn/ChangeLog                                      | 6 +++++-
 ...013.148.15.55-r2.ebuild => talosn-4.01.2013.148.15.55-r3.ebuild} | 0
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
index 9d358bf..21425b7 100644
--- a/sci-chemistry/talosn/ChangeLog
+++ b/sci-chemistry/talosn/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-chemistry/talosn
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  24 Apr 2014; Justin Lecher <jlec@gentoo.org>
+  +talosn-4.01.2013.148.15.55-r3.ebuild:
+  Bump due to upstream tarball change
+
 *talosn-4.01.2013.148.15.55-r2 (18 Jun 2013)
 
   18 Jun 2013; Justin Lecher <jlec@gentoo.org>

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
similarity index 100%
rename from sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
rename to sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2013-06-18 13:36 Justin Lecher
  0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2013-06-18 13:36 UTC (permalink / raw
  To: gentoo-commits

commit:     9d212698b5fd45e8eb6af316de16c741c8a73de5
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 13:36:29 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 13:36:29 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9d212698

sci-chemistry/talosn: drop upstream path in favour of our

Package-Manager: portage-2.2.0_alpha180

---
 sci-chemistry/talosn/ChangeLog                              |  6 ++++++
 ...48.15.55.ebuild => talosn-4.01.2013.148.15.55-r2.ebuild} | 13 +++++++++++--
 2 files changed, 17 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
index dea3c84..9d358bf 100644
--- a/sci-chemistry/talosn/ChangeLog
+++ b/sci-chemistry/talosn/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*talosn-4.01.2013.148.15.55-r2 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  -talosn-4.01.2013.148.15.55.ebuild, +talosn-4.01.2013.148.15.55-r2.ebuild:
+  drop upstream path in favour of our
+
 *talosn-4.01.2013.148.15.55 (18 Jun 2013)
 
   18 Jun 2013; Justin Lecher <jlec@gentoo.org>

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
similarity index 80%
rename from sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
rename to sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
index ac569c3..648c342 100644
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
@@ -15,8 +15,10 @@ LICENSE="all-rights-reserved"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="examples"
 
-RDEPEND=">=virtual/jre-1.5"
-DEPEND="${RDEPEND}"
+DEPEND=">=virtual/jre-1.5"
+RDEPEND="${DEPEND}
+	app-shells/tcsh
+	sci-biology/ncbi-tools"
 
 S="${WORKDIR}"
 
@@ -26,6 +28,12 @@ src_prepare() {
 	local s64
 	use amd64 || s64="_x64"
 	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+
+	sed \
+		-e '/setenv TALOSN_DIR/d' \
+		-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
+		-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
+		-i talosn_ss || die
 }
 
 src_install() {
@@ -54,6 +62,7 @@ src_install() {
 
 	cat >> "${T}"/40talosn <<- EOF
 	TALOSN_DIR="${EPREFIX}/${TALOSN}"
+	#BLASTDB=
 	EOF
 	doenvd "${T}"/40talosn
 }


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2013-06-18  9:07 Justin Lecher
  0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2013-06-18  9:07 UTC (permalink / raw
  To: gentoo-commits

commit:     49368d48095f653b5edef0fb863d5b5e70c0a2d1
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:44:19 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 09:05:22 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=49368d48

sci-chemistry/talosn: New package

Package-Manager: portage-2.2.0_alpha180

---
 sci-chemistry/talosn/ChangeLog                     | 10 ++++
 sci-chemistry/talosn/metadata.xml                  |  5 ++
 .../talosn/talosn-4.01.2013.148.15.55.ebuild       | 59 ++++++++++++++++++++++
 3 files changed, 74 insertions(+)

diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
new file mode 100644
index 0000000..dea3c84
--- /dev/null
+++ b/sci-chemistry/talosn/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/talosn
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*talosn-4.01.2013.148.15.55 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml:
+  New package
+

diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
new file mode 100644
index 0000000..51fdeda
--- /dev/null
+++ b/sci-chemistry/talosn/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+</pkgmetadata>

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
new file mode 100644
index 0000000..ac569c3
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+	local s64
+	use amd64 || s64="_x64"
+	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+}
+
+src_install() {
+	local TALOSN="/opt/${PN}"
+	exeinto ${TALOSN}/bin
+	doexe bin/*
+
+	exeinto ${TALOSN}/com
+	doexe com/*
+
+	exeinto /opt/bin
+	doexe talosn{,_ss}
+
+	insinto ${TALOSN}
+	doins -r tab
+
+	java-pkg_jarinto ${TALOSN}
+	java-pkg_dojar rama.jar
+
+	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r demo
+	fi
+
+	cat >> "${T}"/40talosn <<- EOF
+	TALOSN_DIR="${EPREFIX}/${TALOSN}"
+	EOF
+	doenvd "${T}"/40talosn
+}


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:fixing commit in: sci-chemistry/talosn/
@ 2013-06-18  8:54 Justin Lecher
  2013-06-18  8:56 ` [gentoo-commits] proj/sci:master " Justin Lecher
  0 siblings, 1 reply; 7+ messages in thread
From: Justin Lecher @ 2013-06-18  8:54 UTC (permalink / raw
  To: gentoo-commits

commit:     1181076dda88bff9cba8aa1432fdcaa5a14ba144
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:44:19 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 08:44:19 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1181076d

sci-chemistry/talosn: New package

Package-Manager: portage-2.2.0_alpha180

---
 sci-chemistry/talosn/ChangeLog                     | 10 ++++
 sci-chemistry/talosn/metadata.xml                  |  5 ++
 .../talosn/talosn-4.01.2013.148.15.55.ebuild       | 59 ++++++++++++++++++++++
 3 files changed, 74 insertions(+)

diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
new file mode 100644
index 0000000..dea3c84
--- /dev/null
+++ b/sci-chemistry/talosn/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/talosn
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*talosn-4.01.2013.148.15.55 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml:
+  New package
+

diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
new file mode 100644
index 0000000..51fdeda
--- /dev/null
+++ b/sci-chemistry/talosn/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+</pkgmetadata>

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
new file mode 100644
index 0000000..ac569c3
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+	local s64
+	use amd64 || s64="_x64"
+	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+}
+
+src_install() {
+	local TALOSN="/opt/${PN}"
+	exeinto ${TALOSN}/bin
+	doexe bin/*
+
+	exeinto ${TALOSN}/com
+	doexe com/*
+
+	exeinto /opt/bin
+	doexe talosn{,_ss}
+
+	insinto ${TALOSN}
+	doins -r tab
+
+	java-pkg_jarinto ${TALOSN}
+	java-pkg_dojar rama.jar
+
+	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r demo
+	fi
+
+	cat >> "${T}"/40talosn <<- EOF
+	TALOSN_DIR="${EPREFIX}/${TALOSN}"
+	EOF
+	doenvd "${T}"/40talosn
+}


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2013-06-18  9:07 Justin Lecher
2013-06-18  8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
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