* [gentoo-commits] proj/sci:master commit in: sci-biology/weblogo/
@ 2015-09-08 16:20 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2015-09-08 16:20 UTC (permalink / raw
To: gentoo-commits
commit: 8506ca5aa9fff40c51512b850381a9deb359c76b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Sep 8 16:12:56 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Sep 8 16:12:56 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8506ca5a
sci-biology/weblogo: new perl utility
Package-Manager: portage-2.2.18
sci-biology/weblogo/ChangeLog | 9 ++++++++
sci-biology/weblogo/metadata.xml | 9 ++++++++
sci-biology/weblogo/weblogo-2.8.2.ebuild | 35 ++++++++++++++++++++++++++++++++
3 files changed, 53 insertions(+)
diff --git a/sci-biology/weblogo/ChangeLog b/sci-biology/weblogo/ChangeLog
new file mode 100644
index 0000000..ec5a14c
--- /dev/null
+++ b/sci-biology/weblogo/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/weblogo
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Id$
+
+*weblogo-2.8.2 (08 Sep 2015)
+
+ 08 Sep 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +weblogo-2.8.2.ebuild:
+ sci-biology/weblogo: new perl utility
diff --git a/sci-biology/weblogo/metadata.xml b/sci-biology/weblogo/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/weblogo/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/weblogo/weblogo-2.8.2.ebuild b/sci-biology/weblogo/weblogo-2.8.2.ebuild
new file mode 100644
index 0000000..759952b
--- /dev/null
+++ b/sci-biology/weblogo/weblogo-2.8.2.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PERL_EXPORT_PHASE_FUNCTIONS=no
+inherit perl-module
+
+DESCRIPTION="seqlogo: generate consensus sequence logo figures"
+HOMEPAGE="http://weblogo.berkeley.edu/"
+SRC_URI="http://weblogo.berkeley.edu/release/weblogo.2.8.2.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ app-text/ghostscript-gpl
+ media-gfx/imagemagick"
+
+S="${WORKDIR}/${PN}"
+
+src_install(){
+ perl_set_version
+ dobin seqlogo
+ insinto /usr/share/"${PN}"
+ doins logo.css logo.xml template.eps logo.conf.init clustal.dat globin.fasta test.html logo.cgi info.html README
+ doins -r img
+ insinto ${VENDOR_LIB}
+ doins *.pm
+ dodoc examples.html Crooks-2004-GR-WebLogo.pdf
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/weblogo/
@ 2015-09-21 16:05 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-09-21 16:05 UTC (permalink / raw
To: gentoo-commits
commit: 4dc8d2b5013b98c8ddc37fd9472703d459befbd7
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 15:51:44 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 15:51:44 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4dc8d2b5
sci-biology/weblogo: Fix Header
use einstalldocs
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/weblogo/weblogo-2.8.2.ebuild | 10 ++++++----
1 file changed, 6 insertions(+), 4 deletions(-)
diff --git a/sci-biology/weblogo/weblogo-2.8.2.ebuild b/sci-biology/weblogo/weblogo-2.8.2.ebuild
index 759952b..0ecdf1f 100644
--- a/sci-biology/weblogo/weblogo-2.8.2.ebuild
+++ b/sci-biology/weblogo/weblogo-2.8.2.ebuild
@@ -1,13 +1,13 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: $
+# $Id$
EAPI=5
PERL_EXPORT_PHASE_FUNCTIONS=no
-inherit perl-module
+inherit eutils perl-module
-DESCRIPTION="seqlogo: generate consensus sequence logo figures"
+DESCRIPTION="generate consensus sequence logo figures"
HOMEPAGE="http://weblogo.berkeley.edu/"
SRC_URI="http://weblogo.berkeley.edu/release/weblogo.2.8.2.tar.gz"
@@ -31,5 +31,7 @@ src_install(){
doins -r img
insinto ${VENDOR_LIB}
doins *.pm
- dodoc examples.html Crooks-2004-GR-WebLogo.pdf
+ HTML_DOCS=( examples.html )
+ DOCS=( Crooks-2004-GR-WebLogo.pdf )
+ einstalldocs
}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/weblogo/
@ 2020-10-10 13:45 Aisha Tammy
0 siblings, 0 replies; 5+ messages in thread
From: Aisha Tammy @ 2020-10-10 13:45 UTC (permalink / raw
To: gentoo-commits
commit: fc5c07038aa37eb1444eeac10b2c546944013e1f
Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Sat Oct 10 13:45:23 2020 +0000
Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Sat Oct 10 13:45:23 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fc5c0703
sci-biology/weblogo: version bump to 3.7.5
really cool package, can't do bio without this
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>
sci-biology/weblogo/weblogo-3.7.5.ebuild | 33 ++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/sci-biology/weblogo/weblogo-3.7.5.ebuild b/sci-biology/weblogo/weblogo-3.7.5.ebuild
new file mode 100644
index 000000000..ea07941ff
--- /dev/null
+++ b/sci-biology/weblogo/weblogo-3.7.5.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6..9} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
+inherit distutils-r1
+
+DESCRIPTION="generate consensus sequence logo figures"
+HOMEPAGE="http://weblogo.threeplusone.com/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ dev-python/scipy
+"
+BDEPEND="
+ test? (
+ app-text/ghostscript-gpl
+ dev-python/mypy
+ )
+"
+
+distutils_enable_tests pytest
+
+python_test() {
+ distutils_install_for_testing
+ pytest -vv || die "tests failed with ${EPYTHON}"
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/weblogo/
@ 2020-10-10 13:45 Aisha Tammy
0 siblings, 0 replies; 5+ messages in thread
From: Aisha Tammy @ 2020-10-10 13:45 UTC (permalink / raw
To: gentoo-commits
commit: b28ce7ea7a7f3b4b52bf104d6421d704d67af39b
Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Sat Oct 10 13:45:45 2020 +0000
Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Sat Oct 10 13:45:45 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b28ce7ea
sci-biology/weblogo: drop old version
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>
sci-biology/weblogo/weblogo-2.8.2.ebuild | 36 --------------------------------
1 file changed, 36 deletions(-)
diff --git a/sci-biology/weblogo/weblogo-2.8.2.ebuild b/sci-biology/weblogo/weblogo-2.8.2.ebuild
deleted file mode 100644
index 09bd31ac1..000000000
--- a/sci-biology/weblogo/weblogo-2.8.2.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PERL_EXPORT_PHASE_FUNCTIONS=no
-inherit eutils perl-module
-
-DESCRIPTION="generate consensus sequence logo figures"
-HOMEPAGE="http://weblogo.berkeley.edu/"
-SRC_URI="http://weblogo.berkeley.edu/release/weblogo.2.8.2.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
- app-text/ghostscript-gpl
- media-gfx/imagemagick"
-
-S="${WORKDIR}/${PN}"
-
-src_install(){
- perl_set_version
- dobin seqlogo
- insinto /usr/share/"${PN}"
- doins logo.css logo.xml template.eps logo.conf.init clustal.dat globin.fasta test.html logo.cgi info.html README
- doins -r img
- insinto ${VENDOR_LIB}
- doins *.pm
- HTML_DOCS=( examples.html )
- DOCS=( Crooks-2004-GR-WebLogo.pdf )
- einstalldocs
-}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/weblogo/
@ 2023-05-02 12:15 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2023-05-02 12:15 UTC (permalink / raw
To: gentoo-commits
commit: 9eeb12d5ce027416496c3d3f1f47115b085c2ec4
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:11:56 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:15:21 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9eeb12d5
sci-biology/weblogo: treeclean
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/weblogo/metadata.xml | 12 ------------
sci-biology/weblogo/weblogo-3.7.5.ebuild | 33 --------------------------------
2 files changed, 45 deletions(-)
diff --git a/sci-biology/weblogo/metadata.xml b/sci-biology/weblogo/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/weblogo/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-biology/weblogo/weblogo-3.7.5.ebuild b/sci-biology/weblogo/weblogo-3.7.5.ebuild
deleted file mode 100644
index a8db5bec5..000000000
--- a/sci-biology/weblogo/weblogo-3.7.5.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7..9} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-inherit distutils-r1
-
-DESCRIPTION="generate consensus sequence logo figures"
-HOMEPAGE="http://weblogo.threeplusone.com/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- dev-python/scipy
-"
-BDEPEND="
- test? (
- app-text/ghostscript-gpl
- dev-python/mypy
- )
-"
-
-distutils_enable_tests pytest
-
-python_test() {
- distutils_install_for_testing
- pytest -vv || die "tests failed with ${EPYTHON}"
-}
^ permalink raw reply related [flat|nested] 5+ messages in thread
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