[gentoo-commits] proj/sci:master commit in: sci-biology/tigr-closure/

["Justin Lecher" <jlec@gentoo.org>]

commit:     6d8df48b8581b1c92254ef9e80fa94f6445a1932
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 13:52:53 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 13:52:53 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6d8df48b

Drop obsolete package  Sources unavailable

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/tigr-closure/ChangeLog                 | 13 -----
 sci-biology/tigr-closure/metadata.xml              |  9 ---
 .../tigr-closure/tigr-closure-20080106.ebuild      | 65 ----------------------
 3 files changed, 87 deletions(-)

diff --git a/sci-biology/tigr-closure/ChangeLog b/sci-biology/tigr-closure/ChangeLog
deleted file mode 100644
index 4f76625..0000000
--- a/sci-biology/tigr-closure/ChangeLog
+++ /dev/null
@@ -1,13 +0,0 @@
-# ChangeLog for sci-biology/tigr-closure
-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Id$
-
-  10 Jan 2015; Justin Lecher <jlec@gentoo.org> tigr-closure-20080106.ebuild:
-  Some QA, add license
-
-*tigr-closure-20080106 (07 Jan 2015)
-
-  07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
-  +tigr-closure-20080106.ebuild, +metadata.xml:
-  initial ebuild
-

diff --git a/sci-biology/tigr-closure/metadata.xml b/sci-biology/tigr-closure/metadata.xml
deleted file mode 100644
index 2bc8930..0000000
--- a/sci-biology/tigr-closure/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <herd>sci-biology</herd>
-  <maintainer>
-    <email>mmokrejs@fold.natur.cuni.cz</email>
-    <name>Martin Mokrejs</name>
-  </maintainer>
-</pkgmetadata>

diff --git a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild b/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
deleted file mode 100644
index 3a6f422..0000000
--- a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
+++ /dev/null
@@ -1,65 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit perl-module
-
-DESCRIPTION="TIGR closure tools for the assembly/finishing stage of DNA sequencing projects"
-HOMEPAGE="http://tigr-closure.sourceforge.net/"
-# http://tigr-closure.svn.sourceforge.net/tigr-closure/
-SRC_URI="tigr-closure-svn-20080106.tar.gz"
-
-LICENSE="all-rights-reserved"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-lang/perl"
-RDEPEND=""
-
-src_compile() {
-
-	# Closure Work Order Processing (CWP - CLOVER)
-	# clover and oats
-	cd "${WORKDIR}"/CWPSystem/trunk/ || die
-	# needs TIGR/EUIDService.pm in PERL paths
-	emake dist
-	# how to install the files from install/ ?
-	cd ../.. || die
-
-	#
-	cd ScaffoldMgmt/trunk || die
-	emake dist
-	# FIXME: unpack the .tar file into image during src_install()
-	cd ../.. || die
-
-	# awfull
-	cd ClosureQC/trunk/ || die
-	mkdir sandbox || die
-	${SANDBOX}="${WORKDIR}"/sandbox
-	# have ./src/, ./doc, ./install, ./test/work/drivers, ./test/work/getqc, ./test/tmp
-	cd test || die
-	# ...
-	cd ../../.. || die
-
-	#
-	cd ClosureReactionSystem/trunk || die
-	emake BUILD=true
-	cd ../.. || die
-
-	# some Java servlet?
-	cd AserverConsoleEJB3Hibernate || die
-	# huh?
-	cd ../.. || die
-}
-
-src_install() {
-	cd "${WORKDIR}"/SequenceTiling || die
-	dobin trunk/src/*.pl
-	cd trunk/src/TIGR/SequenceTiling/ || die
-	myinst="DESTDIR=${D}"
-	perl-module_src_install
-	#
-}