* [gentoo-commits] proj/sci:master commit in: sci-chemistry/jligand/
@ 2011-02-26 12:53 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2011-02-26 12:53 UTC (permalink / raw
To: gentoo-commits
commit: 8f68a68a8780a55b58e8622c2df174adaab30a21
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Feb 26 11:46:50 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Feb 26 11:46:50 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8f68a68a
Version Bump
(Portage version: 2.2.0_alpha25/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-chemistry/jligand/ChangeLog | 7 ++++-
sci-chemistry/jligand/jligand-1.0.7.ebuild | 37 ++++++++++++++++++++++++++++
2 files changed, 43 insertions(+), 1 deletions(-)
diff --git a/sci-chemistry/jligand/ChangeLog b/sci-chemistry/jligand/ChangeLog
index f327c12..4c553a1 100644
--- a/sci-chemistry/jligand/ChangeLog
+++ b/sci-chemistry/jligand/ChangeLog
@@ -1,7 +1,12 @@
# ChangeLog for sci-chemistry/jligand
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*jligand-1.0.7 (26 Feb 2011)
+
+ 26 Feb 2011; Justin Lecher <jlec@gentoo.org> +jligand-1.0.7.ebuild:
+ Version Bump
+
10 Jul 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
jligand-0.1.ebuild:
Silence repoman.
diff --git a/sci-chemistry/jligand/jligand-1.0.7.ebuild b/sci-chemistry/jligand/jligand-1.0.7.ebuild
new file mode 100644
index 0000000..378f006
--- /dev/null
+++ b/sci-chemistry/jligand/jligand-1.0.7.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI="4"
+
+inherit java-pkg-2 java-ant-2 multilib
+
+MY_PN="JLigand"
+
+DESCRIPTION="a Java interface which allows links descriptions to be created"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~pyoung/JLigand/JLigand.html"
+SRC_URI="http://www.ysbl.york.ac.uk/mxstat/${MY_PN}/${MY_PN}.${PV}.tar.gz"
+
+LICENSE="ccp4"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+RDEPEND="
+ >=virtual/jre-1.5
+ >=sci-chemistry/refmac-5.6.77
+ >=sci-libs/monomer-db-5.16"
+DEPEND=">=virtual/jdk-1.5"
+
+S="${WORKDIR}"/${MY_PN}.${PV}
+
+src_compile() {
+ sed 's:makefile::g' -i Makefile || die
+ emake
+}
+
+src_install() {
+ java-pkg_dojar ${PN}.jar
+ java-pkg_dolauncher ${PN} \
+ --jar ${PN}.jar
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/jligand/
@ 2011-06-25 17:21 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2011-06-25 17:21 UTC (permalink / raw
To: gentoo-commits
commit: b36071856e3ccd366b30e0f4336cc70781cef7a1
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jun 25 13:18:14 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun 25 13:18:14 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b3607185
Version Bump, cleaned old
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-chemistry/jligand/ChangeLog | 6 +++
sci-chemistry/jligand/jligand-0.1.ebuild | 40 --------------------
...{jligand-1.0.7.ebuild => jligand-1.0.19.ebuild} | 4 +-
sci-chemistry/jligand/metadata.xml | 8 ++--
4 files changed, 12 insertions(+), 46 deletions(-)
diff --git a/sci-chemistry/jligand/ChangeLog b/sci-chemistry/jligand/ChangeLog
index 4c553a1..3444d0c 100644
--- a/sci-chemistry/jligand/ChangeLog
+++ b/sci-chemistry/jligand/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*jligand-1.0.19 (25 Jun 2011)
+
+ 25 Jun 2011; Justin Lecher <jlec@gentoo.org> -jligand-0.1.ebuild,
+ -jligand-1.0.7.ebuild, +jligand-1.0.19.ebuild, metadata.xml:
+ Version Bump, cleaned old
+
*jligand-1.0.7 (26 Feb 2011)
26 Feb 2011; Justin Lecher <jlec@gentoo.org> +jligand-1.0.7.ebuild:
diff --git a/sci-chemistry/jligand/jligand-0.1.ebuild b/sci-chemistry/jligand/jligand-0.1.ebuild
deleted file mode 100644
index f2b9752..0000000
--- a/sci-chemistry/jligand/jligand-0.1.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="2"
-
-inherit java-pkg-2 java-ant-2 multilib
-
-MY_PN="JLigand"
-
-DESCRIPTION="a Java interface which allows links descriptions to be created"
-HOMEPAGE="http://www.ysbl.york.ac.uk/~pyoung/JLigand/JLigand.html"
-SRC_URI="http://www.ysbl.york.ac.uk/~pyoung/${MY_PN}/${MY_PN}_${PV}_Source.tar"
-
-LICENSE="ccp4"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND=">=virtual/jre-1.5
- sci-chemistry/refmac
- sci-libs/monomer-db"
-DEPEND=">=virtual/jdk-1.5"
-
-S="${WORKDIR}"/${MY_PN}
-
-EANT_EXTRA_ARGS="-Dfile.encoding=ISO-8859-1"
-
-src_install() {
- java-pkg_dojar dist/${MY_PN}.jar
- java-pkg_dolauncher ${PN} \
- --main uk.ac.york.ysbl.JLigand \
- --jar ${MY_PN}.jar \
- --pkg_args "/usr/$(get_libdir)/${PN} ${CLIBD_MON} /usr/bin/libcheck /usr/bin/refmac"
-
- insinto /usr/$(get_libdir)/${PN}
- doins -r src/{images,resources} || die
- fperms 775 /usr/$(get_libdir)/${PN}/resources/runLibcheck.csh || die
- fperms 775 /usr/$(get_libdir)/${PN}/resources/runRefmac.csh || die
-}
diff --git a/sci-chemistry/jligand/jligand-1.0.7.ebuild b/sci-chemistry/jligand/jligand-1.0.19.ebuild
similarity index 88%
rename from sci-chemistry/jligand/jligand-1.0.7.ebuild
rename to sci-chemistry/jligand/jligand-1.0.19.ebuild
index 378f006..3a13a64 100644
--- a/sci-chemistry/jligand/jligand-1.0.7.ebuild
+++ b/sci-chemistry/jligand/jligand-1.0.19.ebuild
@@ -2,13 +2,13 @@
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI="4"
+EAPI=4
inherit java-pkg-2 java-ant-2 multilib
MY_PN="JLigand"
-DESCRIPTION="a Java interface which allows links descriptions to be created"
+DESCRIPTION="Java interface which allows links descriptions to be created"
HOMEPAGE="http://www.ysbl.york.ac.uk/~pyoung/JLigand/JLigand.html"
SRC_URI="http://www.ysbl.york.ac.uk/mxstat/${MY_PN}/${MY_PN}.${PV}.tar.gz"
diff --git a/sci-chemistry/jligand/metadata.xml b/sci-chemistry/jligand/metadata.xml
index efb490d..d747d72 100644
--- a/sci-chemistry/jligand/metadata.xml
+++ b/sci-chemistry/jligand/metadata.xml
@@ -1,8 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
- <email>sci@gentoo.org</email>
-</maintainer>
+ <herd>sci</herd>
+ <maintainer>
+ <email>sci@gentoo.org</email>
+ </maintainer>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/jligand/
@ 2013-03-03 17:52 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2013-03-03 17:52 UTC (permalink / raw
To: gentoo-commits
commit: e5b551946163b2aaca1dd54a3933fbf84b2f5e1e
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 3 17:43:10 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Mar 3 17:43:10 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e5b55194
sci-chemistry/jligand: Fix version of refmac dep
Package-Manager: portage-2.2.0_alpha164
---
sci-chemistry/jligand/ChangeLog | 6 +++++-
sci-chemistry/jligand/jligand-1.0.19.ebuild | 4 ++--
sci-chemistry/jligand/metadata.xml | 8 ++++----
3 files changed, 11 insertions(+), 7 deletions(-)
diff --git a/sci-chemistry/jligand/ChangeLog b/sci-chemistry/jligand/ChangeLog
index 3444d0c..79845c4 100644
--- a/sci-chemistry/jligand/ChangeLog
+++ b/sci-chemistry/jligand/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-chemistry/jligand
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 03 Mar 2013; Justin Lecher <jlec@gentoo.org> jligand-1.0.19.ebuild,
+ metadata.xml:
+ Fix version of refmac dep
+
*jligand-1.0.19 (25 Jun 2011)
25 Jun 2011; Justin Lecher <jlec@gentoo.org> -jligand-0.1.ebuild,
diff --git a/sci-chemistry/jligand/jligand-1.0.19.ebuild b/sci-chemistry/jligand/jligand-1.0.19.ebuild
index 3a13a64..8b2ac86 100644
--- a/sci-chemistry/jligand/jligand-1.0.19.ebuild
+++ b/sci-chemistry/jligand/jligand-1.0.19.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -19,7 +19,7 @@ IUSE=""
RDEPEND="
>=virtual/jre-1.5
- >=sci-chemistry/refmac-5.6.77
+ >=sci-chemistry/refmac-5.6
>=sci-libs/monomer-db-5.16"
DEPEND=">=virtual/jdk-1.5"
diff --git a/sci-chemistry/jligand/metadata.xml b/sci-chemistry/jligand/metadata.xml
index 86eeba1..d410f15 100644
--- a/sci-chemistry/jligand/metadata.xml
+++ b/sci-chemistry/jligand/metadata.xml
@@ -1,8 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-chemistry</herd>
- <maintainer>
- <email>sci@gentoo.org</email>
- </maintainer>
+ <herd>sci-chemistry</herd>
+ <maintainer>
+ <email>sci@gentoo.org</email>
+ </maintainer>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/jligand/
@ 2015-09-21 14:04 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-09-21 14:04 UTC (permalink / raw
To: gentoo-commits
commit: 803a0c0b90c05c65f0126de12344809bac1dab84
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 13:45:28 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 13:45:28 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=803a0c0b
sci-chemistry/jligand: Version Bump
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
.../jligand/{jligand-1.0.19.ebuild => jligand-1.0.40.ebuild} | 11 ++++-------
sci-chemistry/jligand/metadata.xml | 2 +-
2 files changed, 5 insertions(+), 8 deletions(-)
diff --git a/sci-chemistry/jligand/jligand-1.0.19.ebuild b/sci-chemistry/jligand/jligand-1.0.40.ebuild
similarity index 73%
rename from sci-chemistry/jligand/jligand-1.0.19.ebuild
rename to sci-chemistry/jligand/jligand-1.0.40.ebuild
index 5b4da3d..655ca75 100644
--- a/sci-chemistry/jligand/jligand-1.0.19.ebuild
+++ b/sci-chemistry/jligand/jligand-1.0.40.ebuild
@@ -1,15 +1,15 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=4
+EAPI=5
inherit java-pkg-2 java-ant-2 multilib
MY_PN="JLigand"
DESCRIPTION="Java interface which allows links descriptions to be created"
-HOMEPAGE="http://www.ysbl.york.ac.uk/~pyoung/JLigand/JLigand.html"
+HOMEPAGE="http://www.ysbl.york.ac.uk/mxstat/JLigand/"
SRC_URI="http://www.ysbl.york.ac.uk/mxstat/${MY_PN}/${MY_PN}.${PV}.tar.gz"
LICENSE="ccp4"
@@ -17,10 +17,7 @@ SLOT="0"
KEYWORDS=""
IUSE=""
-RDEPEND="
- >=virtual/jre-1.5
- >=sci-chemistry/refmac-5.6
- >=sci-libs/monomer-db-5.16"
+RDEPEND=">=virtual/jre-1.5"
DEPEND=">=virtual/jdk-1.5"
S="${WORKDIR}"/${MY_PN}.${PV}
diff --git a/sci-chemistry/jligand/metadata.xml b/sci-chemistry/jligand/metadata.xml
index 9ac9ffd..e42d0af 100644
--- a/sci-chemistry/jligand/metadata.xml
+++ b/sci-chemistry/jligand/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci-chemistry</herd>
+ <herd>sci-chemistry</herd>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/jligand/
@ 2021-02-04 8:01 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-02-04 8:01 UTC (permalink / raw
To: gentoo-commits
commit: e02c8d46aae2fd1ac53cc7660202fed34e0428b1
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Feb 4 08:01:32 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Feb 4 08:01:32 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e02c8d46
sci-chemistry/jligand: EAPI bump, add keywords
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-chemistry/jligand/jligand-1.0.40.ebuild | 15 +++++++--------
1 file changed, 7 insertions(+), 8 deletions(-)
diff --git a/sci-chemistry/jligand/jligand-1.0.40.ebuild b/sci-chemistry/jligand/jligand-1.0.40.ebuild
index 52ae2c0a1..f2ab9ee21 100644
--- a/sci-chemistry/jligand/jligand-1.0.40.ebuild
+++ b/sci-chemistry/jligand/jligand-1.0.40.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
inherit java-pkg-2 java-ant-2 multilib
@@ -13,13 +13,12 @@ SRC_URI="http://www.ysbl.york.ac.uk/mxstat/${MY_PN}/${MY_PN}.${PV}.tar.gz"
LICENSE="ccp4"
SLOT="0"
-KEYWORDS=""
-IUSE=""
+KEYWORDS="~amd64"
RDEPEND=">=virtual/jre-1.5"
DEPEND=">=virtual/jdk-1.5"
-S="${WORKDIR}"/${MY_PN}.${PV}
+S="${WORKDIR}/${MY_PN}.${PV}"
src_compile() {
sed 's:makefile::g' -i Makefile || die
@@ -27,7 +26,7 @@ src_compile() {
}
src_install() {
- java-pkg_dojar ${PN}.jar
- java-pkg_dolauncher ${PN} \
- --jar ${PN}.jar
+ java-pkg_newjar JLigand.jar "${PN}.jar"
+ java-pkg_dolauncher JLigand \
+ --jar "${PN}.jar"
}
^ permalink raw reply related [flat|nested] 5+ messages in thread
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