[gentoo-commits] repo/gentoo:master commit in: dev-python/astropy/files/, dev-python/astropy/

["Justin Lecher" <jlec@gentoo.org>]

commit:     9bfc3cd91fb88333c88bd9b6e2976a64f1bc99e2
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 14 11:39:58 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 14 11:55:54 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9bfc3cd9

dev-python/astropy: Version Bump

import patches from fedora for unbundling

Closes gentoo/gentoo#10

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556884

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 dev-python/astropy/astropy-1.0.4.ebuild            | 31 +++++++-----
 .../files/astropy-1.0.4-system-configobj.patch     | 14 ++++++
 .../files/astropy-1.0.4-system-pytest.patch        | 14 ++++++
 .../astropy/files/astropy-1.0.4-system-six.patch   | 12 +++++
 dev-python/astropy/files/astropy-ply.py            | 58 ++++++++++++++++++++++
 5 files changed, 116 insertions(+), 13 deletions(-)

diff --git a/dev-python/astropy/astropy-1.0.4.ebuild b/dev-python/astropy/astropy-1.0.4.ebuild
index 88cd6a8..e8700ab 100644
--- a/dev-python/astropy/astropy-1.0.4.ebuild
+++ b/dev-python/astropy/astropy-1.0.4.ebuild
@@ -20,6 +20,8 @@ IUSE="doc test"
 RDEPEND="
 	>=dev-libs/expat-2.1.0:0=
 	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/ply[${PYTHON_USEDEP}]
+	dev-python/six[${PYTHON_USEDEP}]
 	>=sci-astronomy/erfa-1.2:0=
 	>=sci-astronomy/wcslib-4.25:0=
 	>=sci-libs/cfitsio-3.350:0=
@@ -42,16 +44,23 @@ DEPEND="${RDEPEND}
 		sci-libs/scipy[${PYTHON_USEDEP}]
 	)"
 
-PATCHES=( "${FILESDIR}/${P}-disable_helper.patch" )
+PATCHES=(
+	"${FILESDIR}/${P}-disable_helper.patch"
+	"${FILESDIR}/${P}-system-six.patch"
+	"${FILESDIR}/${P}-system-pytest.patch"
+	"${FILESDIR}/${P}-system-configobj.patch"
+	)
 
 python_prepare_all() {
+	export mydistutilsargs="--offline"
 	rm -r ${PN}_helpers || die
-	rm -r cextern/*/* || die
-	distutils-r1_python_prepare_all
-}
+	cp "${FILESDIR}"/astropy-ply.py astropy/extern/ply.py || die
+	rm -r cextern/{expat,erfa,cfitsio,wcslib} || die
+
+	echo "[build]" >> setup.cfg
+	echo "use_system_libraries=1" >> setup.cfg
 
-python_compile() {
-	distutils-r1_python_compile --use-system-libraries --offline
+	distutils-r1_python_prepare_all
 }
 
 python_compile_all() {
@@ -60,19 +69,15 @@ python_compile_all() {
 		VARTEXFONTS="${T}"/fonts \
 			MPLCONFIGDIR="${BUILD_DIR}" \
 			PYTHONPATH="${BUILD_DIR}"/lib \
-			esetup.py build_sphinx --offline
+			esetup.py build_sphinx
 	fi
 }
 
 python_test() {
-	esetup.py --offline test
-}
-
-python_install() {
-	distutils-r1_python_install --offline --use-system-libraries
+	py.test -vv -k "not test_web_profile" astropy || die
 }
 
 python_install_all() {
 	use doc && local HTML_DOCS=( docs/_build/html/. )
-	distutils-r1_python_install_all --offline
+	distutils-r1_python_install_all
 }

diff --git a/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch b/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch
new file mode 100644
index 0000000..9578c0d
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch
@@ -0,0 +1,14 @@
+diff -ur astropy-0.4.1/astropy/config/configuration.py astropy-0.4.1.configobj/astropy/config/configuration.py
+--- astropy-0.4.1/astropy/config/configuration.py	2014-09-01 22:41:30.066853605 +0200
++++ astropy-0.4.1.configobj/astropy/config/configuration.py	2014-09-01 22:40:50.793528942 +0200
+@@ -23,7 +23,8 @@
+ import types
+ from warnings import warn
+ 
+-from ..extern.configobj import configobj, validate
++import configobj
++import validate
+ from ..utils.exceptions import AstropyWarning, AstropyDeprecationWarning
+ from ..utils import find_current_module
+ from ..utils.misc import InheritDocstrings
+

diff --git a/dev-python/astropy/files/astropy-1.0.4-system-pytest.patch b/dev-python/astropy/files/astropy-1.0.4-system-pytest.patch
new file mode 100644
index 0000000..638f7e8
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.0.4-system-pytest.patch
@@ -0,0 +1,14 @@
+diff -ur astropy-1.0/astropy/tests/helper.py astropy-1.0.pytest/astropy/tests/helper.py
+--- astropy-1.0/astropy/tests/helper.py	2015-02-18 22:45:32.000000000 +0100
++++ astropy-1.0.pytest/astropy/tests/helper.py	2015-02-19 16:20:28.201778929 +0100
+@@ -35,8 +35,8 @@
+                                 AstropyDeprecationWarning,
+                                 AstropyPendingDeprecationWarning)
+ from ..config import configuration
+-
+-if os.environ.get('ASTROPY_USE_SYSTEM_PYTEST') or '_pytest' in sys.modules:
++# Modified by Fedora package
++if True or os.environ.get('ASTROPY_USE_SYSTEM_PYTEST') or '_pytest' in sys.modules:
+     import pytest
+ 
+ else:

diff --git a/dev-python/astropy/files/astropy-1.0.4-system-six.patch b/dev-python/astropy/files/astropy-1.0.4-system-six.patch
new file mode 100644
index 0000000..8bfab98
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.0.4-system-six.patch
@@ -0,0 +1,12 @@
+diff -ur astropy-0.4.1/astropy/extern/six.py astropy-0.4.1.six/astropy/extern/six.py
+--- astropy-0.4.1/astropy/extern/six.py	2014-09-01 21:57:56.663393218 +0200
++++ astropy-0.4.1.six/astropy/extern/six.py	2014-09-01 21:59:02.940933294 +0200
+@@ -13,7 +13,7 @@
+ # Update this to prevent Astropy from using its bundled copy of six
+ # (but only if some other version of at least _SIX_MIN_VERSION can
+ # be provided)
+-_SIX_SEARCH_PATH = ['astropy.extern.bundled.six', 'six']
++_SIX_SEARCH_PATH = ['six', 'astropy.extern.bundled.six']
+ 
+ 
+ def _find_module(name, path=None):

diff --git a/dev-python/astropy/files/astropy-ply.py b/dev-python/astropy/files/astropy-ply.py
new file mode 100644
index 0000000..19eb104
--- /dev/null
+++ b/dev-python/astropy/files/astropy-ply.py
@@ -0,0 +1,58 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
+
+"""
+Handle loading ply package from system or from the bundled copy
+"""
+
+import imp
+from distutils.version import StrictVersion
+
+
+def _find_module(name, path=None):
+    """
+    Alternative to `imp.find_module` that can also search in subpackages.
+    """
+
+    parts = name.split('.')
+
+    for part in parts:
+        if path is not None:
+            path = [path]
+
+        fh, path, descr = imp.find_module(part, path)
+
+    return fh, path, descr
+
+_PLY_MIN_VERSION = StrictVersion('3.4')
+
+# Update this to prevent Astropy from using its bundled copy of ply
+# (but only if some other version of at least _PLY_MIN_VERSION can
+# be provided)
+_PLY_SEARCH_PATH = ['ply']
+
+
+for mod_name in _PLY_SEARCH_PATH:
+    try:
+        mod_info = _find_module(mod_name)
+        #mod_lex_info = _find_module(mod_name + '.lex')
+    except ImportError:
+        continue
+
+    mod = imp.load_module(__name__, *mod_info)
+    #mod_lex = imp.load_module(__name__ + '.lex', *mod_lex_info)
+
+    try:
+    #    if StrictVersion(mod_lex.__version__) >= _PLY_MIN_VERSION:
+    #        break
+        break
+    except (AttributeError, ValueError):
+        # Attribute error if the ply module isn't what it should be and doesn't
+        # have a .__version__; ValueError if the version string exists but is
+        # somehow bogus/unparseable
+        continue
+else:
+    raise ImportError(
+        "Astropy requires the 'ply' module of minimum version {0}; "
+        "normally this is bundled with the astropy package so if you get "
+        "this warning consult the packager of your Astropy "
+        "distribution.".format(_PLY_MIN_VERSION))