From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/tophat/
Date: Mon, 7 Sep 2015 06:49:35 +0000 (UTC) [thread overview]
Message-ID: <1441608563.e8bad311842f4dbbd58670dc3dd9a778258fae25.jlec@gentoo> (raw)
commit: e8bad311842f4dbbd58670dc3dd9a778258fae25
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 7 06:49:23 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 7 06:49:23 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e8bad311
sci-biology/tophat: Drop unnecessary deps
On behalf of Martin Mokrejs
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/tophat/metadata.xml | 3 ---
sci-biology/tophat/tophat-2.0.12.ebuild | 2 --
sci-biology/tophat/tophat-2.0.13.ebuild | 2 --
sci-biology/tophat/tophat-2.0.14.ebuild | 2 --
4 files changed, 9 deletions(-)
diff --git a/sci-biology/tophat/metadata.xml b/sci-biology/tophat/metadata.xml
index 36cf4a1..f17a827 100644
--- a/sci-biology/tophat/metadata.xml
+++ b/sci-biology/tophat/metadata.xml
@@ -2,7 +2,4 @@
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
- <use>
- <flag name="bam">Compile support for the BAM format</flag>
- </use>
</pkgmetadata>
diff --git a/sci-biology/tophat/tophat-2.0.12.ebuild b/sci-biology/tophat/tophat-2.0.12.ebuild
index 119418e..7c9cf07 100644
--- a/sci-biology/tophat/tophat-2.0.12.ebuild
+++ b/sci-biology/tophat/tophat-2.0.12.ebuild
@@ -29,8 +29,6 @@ DEPEND="dev-libs/boost"
# samtools_0.1.18 sort
# samtools_0.1.18 merge -f -h -u -Q --sam-header
RDEPEND="${DEPEND}
- >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}]
- <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}]
>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )"
# PATCHES=( "${FILESDIR}"/${P}-flags.patch )
diff --git a/sci-biology/tophat/tophat-2.0.13.ebuild b/sci-biology/tophat/tophat-2.0.13.ebuild
index 88e26be..6625162 100644
--- a/sci-biology/tophat/tophat-2.0.13.ebuild
+++ b/sci-biology/tophat/tophat-2.0.13.ebuild
@@ -29,8 +29,6 @@ DEPEND="dev-libs/boost"
# samtools_0.1.18 sort
# samtools_0.1.18 merge -f -h -u -Q --sam-header
RDEPEND="${DEPEND}
- >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}]
- <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}]
>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )"
# PATCHES=( "${FILESDIR}"/${P}-flags.patch )
diff --git a/sci-biology/tophat/tophat-2.0.14.ebuild b/sci-biology/tophat/tophat-2.0.14.ebuild
index f38855b..0b8f1e8 100644
--- a/sci-biology/tophat/tophat-2.0.14.ebuild
+++ b/sci-biology/tophat/tophat-2.0.14.ebuild
@@ -29,8 +29,6 @@ DEPEND="dev-libs/boost"
# samtools_0.1.18 sort
# samtools_0.1.18 merge -f -h -u -Q --sam-header
RDEPEND="${DEPEND}
- >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}]
- <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}]
>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )"
# see https://aur.archlinux.org/packages/tophat/ about linking issues
next reply other threads:[~2015-09-07 6:49 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-09-07 6:49 Justin Lecher [this message]
-- strict thread matches above, loose matches on Subject: below --
2015-08-15 6:07 [gentoo-commits] proj/sci:master commit in: sci-biology/tophat/ Justin Lecher
2015-05-02 16:29 Martin Mokrejs
2015-04-28 19:04 Martin Mokrejs
2015-04-28 12:54 Martin Mokrejs
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