* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustal-omega/
@ 2015-08-27 9:58 Agostino Sarubbo
0 siblings, 0 replies; 7+ messages in thread
From: Agostino Sarubbo @ 2015-08-27 9:58 UTC (permalink / raw
To: gentoo-commits
commit: b8573df4ab5efb5b25d3ee36db39e5c994d1ad6b
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 09:58:14 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 09:58:50 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b8573df4
sci-biology/clustal-omega: amd64 stable wrt bug #558888
Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="amd64"
sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild b/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild
index e56766f..ae92334 100644
--- a/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild
+++ b/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="http://www.clustal.org/omega/${P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="amd64 ~x86"
IUSE="static-libs"
DEPEND="dev-libs/argtable"
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustal-omega/
@ 2015-08-27 10:02 Agostino Sarubbo
0 siblings, 0 replies; 7+ messages in thread
From: Agostino Sarubbo @ 2015-08-27 10:02 UTC (permalink / raw
To: gentoo-commits
commit: 44e16bc011bb1c5a192ea5c4ecef9e8cf893c0c8
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 10:02:36 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 10:02:36 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=44e16bc0
sci-biology/clustal-omega: x86 stable wrt bug #558888
Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="x86"
sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild b/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild
index ae92334..c7ee43e 100644
--- a/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild
+++ b/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="http://www.clustal.org/omega/${P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="amd64 ~x86"
+KEYWORDS="amd64 x86"
IUSE="static-libs"
DEPEND="dev-libs/argtable"
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustal-omega/
@ 2015-08-27 13:47 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2015-08-27 13:47 UTC (permalink / raw
To: gentoo-commits
commit: df29c0c09cd92103aeac4fc4a0326c00b2c0221b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 13:43:23 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 13:47:53 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=df29c0c0
sci-biology/clustal-omega: Drop old
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/clustal-omega/Manifest | 1 -
.../clustal-omega/clustal-omega-1.2.0.ebuild | 38 ----------------------
2 files changed, 39 deletions(-)
diff --git a/sci-biology/clustal-omega/Manifest b/sci-biology/clustal-omega/Manifest
index 2394b3a..09e26af 100644
--- a/sci-biology/clustal-omega/Manifest
+++ b/sci-biology/clustal-omega/Manifest
@@ -1,2 +1 @@
-DIST clustal-omega-1.2.0.tar.gz 1156741 SHA256 cbf5ad4e1ce88641cca307be1edfe95d3882997d71c11b43c8e1fcd6e388c61d SHA512 d207699e1158178e2d7122620026b199251ab86bcc3f72a08d58f23e2dd5c2961340e872a13c34f1d6832c5eef5ff8ab09c43f0cb51a81d6c4ef554f936434e2 WHIRLPOOL 41505b42829d440fd312f1538ef78fb7d0f668008cd00bcc52022139eb2ff21d05d89519af2a18e5a2f845e24a5d374a81eb4163c2720a32f71ead7ce40e4eac
DIST clustal-omega-1.2.1.tar.gz 1164492 SHA256 0ef32727aa25c6ecf732083e668a0f45bc17085c28a5c7b4459f4750419f2b0a SHA512 1aa69e319f999f7cd746e2d2ffcafeafc0eb15ed4777abb5b32df63a39a23fa2091977efccfcf9428468103b8e48c4ab0a3ce3967b9c55daaadf3a6a3b57e8de WHIRLPOOL b079dcd659839a85e7772b717ef5dce25b816f2c96eb0f6eea5a4a53f2abd25fb4435291f2a7b739d72d94c06fdbd9c85300ff4cbb03b2861d31d1ad3d196577
diff --git a/sci-biology/clustal-omega/clustal-omega-1.2.0.ebuild b/sci-biology/clustal-omega/clustal-omega-1.2.0.ebuild
deleted file mode 100644
index ccded19..0000000
--- a/sci-biology/clustal-omega/clustal-omega-1.2.0.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=true
-
-inherit autotools-utils
-
-DESCRIPTION="Scalable multiple alignment of protein sequences"
-HOMEPAGE="http://www.clustal.org/omega/"
-SRC_URI="http://www.clustal.org/omega/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="static-libs"
-
-DEPEND="dev-libs/argtable"
-RDEPEND="${DEPEND}"
-
-AUTOTOOLS_IN_SOURCE_BUILD=1
-
-src_prepare() {
- sed \
- -e "s:-O3::g" \
- -i configure.ac || die
- autotools-utils_src_prepare
-}
-
-src_install() {
- autotools-utils_src_install
- if ! use static-libs; then
- rm -f "${ED}"/usr/$(get_libdir)/*.a || die
- rm -fr "${ED}"/usr/$(get_libdir)/pkgconfig || die
- fi
-}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustal-omega/
@ 2016-07-02 18:35 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2016-07-02 18:35 UTC (permalink / raw
To: gentoo-commits
commit: 26f3eb9ecc1e16ca67538a3e3ec1d471c3c7f722
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 2 18:35:10 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jul 2 18:35:28 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=26f3eb9e
sci-biology/clustal-omega: Version Bump
Package-Manager: portage-2.3.0
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/clustal-omega/Manifest | 1 +
.../clustal-omega/clustal-omega-1.2.2.ebuild | 34 ++++++++++++++++++++++
2 files changed, 35 insertions(+)
diff --git a/sci-biology/clustal-omega/Manifest b/sci-biology/clustal-omega/Manifest
index 09e26af..7b133ae 100644
--- a/sci-biology/clustal-omega/Manifest
+++ b/sci-biology/clustal-omega/Manifest
@@ -1 +1,2 @@
DIST clustal-omega-1.2.1.tar.gz 1164492 SHA256 0ef32727aa25c6ecf732083e668a0f45bc17085c28a5c7b4459f4750419f2b0a SHA512 1aa69e319f999f7cd746e2d2ffcafeafc0eb15ed4777abb5b32df63a39a23fa2091977efccfcf9428468103b8e48c4ab0a3ce3967b9c55daaadf3a6a3b57e8de WHIRLPOOL b079dcd659839a85e7772b717ef5dce25b816f2c96eb0f6eea5a4a53f2abd25fb4435291f2a7b739d72d94c06fdbd9c85300ff4cbb03b2861d31d1ad3d196577
+DIST clustal-omega-1.2.2.tar.gz 1169632 SHA256 e48c533300f9ba75870861cf40516a36f3b184b1a39a5b2b926c73bd8639ea41 SHA512 82a97b1e0ca51b9ad61fa2ba3426e55d220003386dee124aaa6103665a2c566182fb4f5cf014d4af3892b2858453e95d4ff36ce90e49d1ae81d95da9ef2ffca0 WHIRLPOOL a256cf2902df9969afefc0301806b18ee16376e510a47fc1f6f4efc755eb11a157caff375b46579750a577ee0cdceff64fdf6e8360cd29a8d3bb6fb8665a198a
diff --git a/sci-biology/clustal-omega/clustal-omega-1.2.2.ebuild b/sci-biology/clustal-omega/clustal-omega-1.2.2.ebuild
new file mode 100644
index 0000000..9e625e4
--- /dev/null
+++ b/sci-biology/clustal-omega/clustal-omega-1.2.2.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools
+
+DESCRIPTION="Scalable multiple alignment of protein sequences"
+HOMEPAGE="http://www.clustal.org/omega/"
+SRC_URI="http://www.clustal.org/omega/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="static-libs"
+
+DEPEND="dev-libs/argtable"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+ sed \
+ -e "s:-O3::g" \
+ -i configure.ac || die
+ default
+ eautoreconf
+}
+
+src_install() {
+ default
+ if ! use static-libs; then
+ rm -f "${ED}"/usr/$(get_libdir)/*.a || die
+ fi
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustal-omega/
@ 2016-07-02 19:22 David Seifert
0 siblings, 0 replies; 7+ messages in thread
From: David Seifert @ 2016-07-02 19:22 UTC (permalink / raw
To: gentoo-commits
commit: 9585fe3961174014edd709173976436a1cc009ac
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 2 19:22:27 2016 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Jul 2 19:22:27 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9585fe39
sci-biology/clustal-omega: Unconditionally prune .la files
Package-Manager: portage-2.3.0
.../{clustal-omega-1.2.2.ebuild => clustal-omega-1.2.2-r1.ebuild} | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/sci-biology/clustal-omega/clustal-omega-1.2.2.ebuild b/sci-biology/clustal-omega/clustal-omega-1.2.2-r1.ebuild
similarity index 84%
rename from sci-biology/clustal-omega/clustal-omega-1.2.2.ebuild
rename to sci-biology/clustal-omega/clustal-omega-1.2.2-r1.ebuild
index 9e625e4..741fc68 100644
--- a/sci-biology/clustal-omega/clustal-omega-1.2.2.ebuild
+++ b/sci-biology/clustal-omega/clustal-omega-1.2.2-r1.ebuild
@@ -4,7 +4,7 @@
EAPI=6
-inherit autotools
+inherit autotools eutils
DESCRIPTION="Scalable multiple alignment of protein sequences"
HOMEPAGE="http://www.clustal.org/omega/"
@@ -28,7 +28,5 @@ src_prepare() {
src_install() {
default
- if ! use static-libs; then
- rm -f "${ED}"/usr/$(get_libdir)/*.a || die
- fi
+ prune_libtool_files --all
}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustal-omega/
@ 2016-12-23 10:26 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2016-12-23 10:26 UTC (permalink / raw
To: gentoo-commits
commit: bd52036387a7f3224491953f51b244d44eb284f3
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Dec 23 10:13:11 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Dec 23 10:26:23 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd520363
sci-biology/clustal-omega: Version Bump
Thanks Fabian Sievers notifying me
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/clustal-omega/Manifest | 1 +
.../clustal-omega/clustal-omega-1.2.4.ebuild | 38 ++++++++++++++++++++++
2 files changed, 39 insertions(+)
diff --git a/sci-biology/clustal-omega/Manifest b/sci-biology/clustal-omega/Manifest
index 72af644..7892ccb 100644
--- a/sci-biology/clustal-omega/Manifest
+++ b/sci-biology/clustal-omega/Manifest
@@ -1,2 +1,3 @@
DIST clustal-omega-1.2.1.tar.gz 1164492 SHA256 0ef32727aa25c6ecf732083e668a0f45bc17085c28a5c7b4459f4750419f2b0a SHA512 1aa69e319f999f7cd746e2d2ffcafeafc0eb15ed4777abb5b32df63a39a23fa2091977efccfcf9428468103b8e48c4ab0a3ce3967b9c55daaadf3a6a3b57e8de WHIRLPOOL b079dcd659839a85e7772b717ef5dce25b816f2c96eb0f6eea5a4a53f2abd25fb4435291f2a7b739d72d94c06fdbd9c85300ff4cbb03b2861d31d1ad3d196577
DIST clustal-omega-1.2.3.tar.gz 1170684 SHA256 88f5ead3f09250872d77427d083182e5e44743ba79ab69294fb61fb50cd4e0cb SHA512 ade516475b243ab21ac3359bc13bc0593294de8f52bbff237bb558859d458b89b2d8773f28c1afc5bfba6c02284e9dbb30cf6e769c66b0bda61789e1602c9c23 WHIRLPOOL 5f4d69a8f4605fd74dfa906d1b530d235e5ba4aaa946b4ce0a645352325b2c4732f43fff930649044a5045ad9bef5c7952e995a0742a5470ccaff17bf6de80d3
+DIST clustal-omega-1.2.4.tar.gz 1170516 SHA256 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee SHA512 b31514c30b412d731ee22c9020156b65a6a6cbc6fd51edc195d17b560935184bc070feeb58964c54df9eecdefb00e5a21ce859cb0ea69d92917f6bd8e93b819e WHIRLPOOL 86fa6e6f4db128b122abeee470a7c1b0150e64f38d58c6ba620b4b9afd65d91f55d6971fef99b0dfd10ccdc550da1d195eec9a91cdde271947e7a703ca2384d3
diff --git a/sci-biology/clustal-omega/clustal-omega-1.2.4.ebuild b/sci-biology/clustal-omega/clustal-omega-1.2.4.ebuild
new file mode 100644
index 00000000..7c64c5b
--- /dev/null
+++ b/sci-biology/clustal-omega/clustal-omega-1.2.4.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools
+
+DESCRIPTION="Scalable multiple alignment of protein sequences"
+HOMEPAGE="http://www.clustal.org/omega/"
+SRC_URI="http://www.clustal.org/omega/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="static-libs"
+
+DEPEND="dev-libs/argtable"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+ sed \
+ -e "s:-O3::g" \
+ -i configure.ac || die
+ default
+ eautoreconf
+}
+
+src_configure() {
+ econf \
+ --enable-shared \
+ $(use_enable static-libs static)
+}
+
+src_install() {
+ default
+ find "${D}" -name '*.la' -delete || die
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustal-omega/
@ 2017-09-30 4:32 Michael Palimaka
0 siblings, 0 replies; 7+ messages in thread
From: Michael Palimaka @ 2017-09-30 4:32 UTC (permalink / raw
To: gentoo-commits
commit: 6ae78366a616d3d75af252763b4512392469ab71
Author: Michael Palimaka <kensington <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 30 04:31:10 2017 +0000
Commit: Michael Palimaka <kensington <AT> gentoo <DOT> org>
CommitDate: Sat Sep 30 04:32:10 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6ae78366
sci-biology/clustal-omega: stabilise 1.2.4 for amd64/x86
Closes: https://bugs.gentoo.org/632344
Package-Manager: Portage-2.3.8, Repoman-2.3.3
sci-biology/clustal-omega/clustal-omega-1.2.4.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/clustal-omega/clustal-omega-1.2.4.ebuild b/sci-biology/clustal-omega/clustal-omega-1.2.4.ebuild
index b0d0acc3cd5..1e7e1f8b166 100644
--- a/sci-biology/clustal-omega/clustal-omega-1.2.4.ebuild
+++ b/sci-biology/clustal-omega/clustal-omega-1.2.4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -11,7 +11,7 @@ SRC_URI="http://www.clustal.org/omega/${P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="amd64 x86"
IUSE="static-libs"
DEPEND="dev-libs/argtable"
^ permalink raw reply related [flat|nested] 7+ messages in thread
end of thread, other threads:[~2017-09-30 4:32 UTC | newest]
Thread overview: 7+ messages (download: mbox.gz follow: Atom feed
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2016-12-23 10:26 Justin Lecher
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2016-07-02 18:35 Justin Lecher
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