* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-esim4/
@ 2015-08-27 9:58 Agostino Sarubbo
0 siblings, 0 replies; 7+ messages in thread
From: Agostino Sarubbo @ 2015-08-27 9:58 UTC (permalink / raw
To: gentoo-commits
commit: 035780e2bd973e8c4e907ff615b843efbf47f3fd
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 09:57:27 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 09:58:46 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=035780e2
sci-biology/embassy-esim4: amd64 stable wrt bug #558888
Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="amd64"
sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
index 470cb0b..f1d8515 100644
--- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
@@ -10,6 +10,6 @@ AUTOTOOLS_AUTORECONF=1
inherit emboss-r1
-KEYWORDS="~amd64 ~ppc ~x86 ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~ppc ~x86 ~x86-linux ~ppc-macos"
PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-esim4/
@ 2015-08-27 10:02 Agostino Sarubbo
0 siblings, 0 replies; 7+ messages in thread
From: Agostino Sarubbo @ 2015-08-27 10:02 UTC (permalink / raw
To: gentoo-commits
commit: e637b075de9e617154d0df8066d986f4a7a4467c
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 10:01:53 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 10:01:53 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e637b075
sci-biology/embassy-esim4: x86 stable wrt bug #558888
Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="x86"
sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
index f1d8515..8dd9caf 100644
--- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
@@ -10,6 +10,6 @@ AUTOTOOLS_AUTORECONF=1
inherit emboss-r1
-KEYWORDS="amd64 ~ppc ~x86 ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~ppc x86 ~x86-linux ~ppc-macos"
PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-esim4/
@ 2015-08-27 13:47 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2015-08-27 13:47 UTC (permalink / raw
To: gentoo-commits
commit: 3707b0ac657e89cdbdfc406bad8b1390e2c65626
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 13:36:29 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 13:47:48 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3707b0ac
sci-biology/embassy-esim4: Drop old
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/embassy-esim4/Manifest | 2 --
sci-biology/embassy-esim4/embassy-esim4-1.0.0-r5.ebuild | 13 -------------
2 files changed, 15 deletions(-)
diff --git a/sci-biology/embassy-esim4/Manifest b/sci-biology/embassy-esim4/Manifest
index ade72c4..d6b2e7d 100644
--- a/sci-biology/embassy-esim4/Manifest
+++ b/sci-biology/embassy-esim4/Manifest
@@ -1,3 +1 @@
-DIST EMBOSS-6.0.1.tar.gz 20204153 SHA256 3e352902aa9dab88bf486457ff23794f19398dfc6b550c4bf175dfcad34c233d
-DIST embassy-6.0.1-esim4-1.0.0.tar.gz 431898 SHA256 219b3541e2a67d31fd62140c2c9c2b41e2d3d814dec6aaf691f764e337917577
DIST embassy-esim4-1.0.0.650.tar.gz 473261 SHA256 ce2f8a4e802da7e11ac3cbaf24406d9b33d4aa488f1c68bbbc8e969ec7e0b671 SHA512 623b241915217ffb314e3fc4ca6aed5e1683b78b6c76f899b67c4e5d48ce83c9920d79b1c5a1508d61856c332e614020d0804b7252c535d9622f9623f29cd152 WHIRLPOOL ea34bd05cc41f8e1e4af8eebfca9f1c0888c96f0dbb11df79c2cd8966b27d72f019c8ec3043ca7c9e276e015232476165a77336590ace448766a45163f654d62
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r5.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r5.ebuild
deleted file mode 100644
index 927f8ab..0000000
--- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r5.ebuild
+++ /dev/null
@@ -1,13 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EBOV="6.0.1"
-
-inherit embassy
-
-DESCRIPTION="EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA"
-SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/EMBOSS-${EBOV}.tar.gz
- mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
-
-KEYWORDS="amd64 ~ppc x86"
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-esim4/
@ 2017-02-06 21:27 David Seifert
0 siblings, 0 replies; 7+ messages in thread
From: David Seifert @ 2017-02-06 21:27 UTC (permalink / raw
To: gentoo-commits
commit: 4dc9175c28a5c633a744706a515380b53459ec2b
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 6 20:48:00 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Feb 6 21:24:54 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4dc9175c
sci-biology/embassy-esim4: Remove ppc from KEYWORDS
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3856
sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
index 8dd9caf..e134143 100644
--- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -10,6 +10,6 @@ AUTOTOOLS_AUTORECONF=1
inherit emboss-r1
-KEYWORDS="amd64 ~ppc x86 ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 x86 ~x86-linux ~ppc-macos"
PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-esim4/
@ 2017-02-19 18:44 David Seifert
0 siblings, 0 replies; 7+ messages in thread
From: David Seifert @ 2017-02-19 18:44 UTC (permalink / raw
To: gentoo-commits
commit: 7c7f1c81f9d8804b876e860b0784e25d9febbfba
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 19 18:41:37 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Feb 19 18:44:06 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c7f1c81
sci-biology/embassy-esim4: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
sci-biology/embassy-esim4/Manifest | 1 -
sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild | 15 ---------------
2 files changed, 16 deletions(-)
diff --git a/sci-biology/embassy-esim4/Manifest b/sci-biology/embassy-esim4/Manifest
index 27008722ca..08b889f6d7 100644
--- a/sci-biology/embassy-esim4/Manifest
+++ b/sci-biology/embassy-esim4/Manifest
@@ -1,2 +1 @@
-DIST embassy-esim4-1.0.0.650.tar.gz 473261 SHA256 ce2f8a4e802da7e11ac3cbaf24406d9b33d4aa488f1c68bbbc8e969ec7e0b671 SHA512 623b241915217ffb314e3fc4ca6aed5e1683b78b6c76f899b67c4e5d48ce83c9920d79b1c5a1508d61856c332e614020d0804b7252c535d9622f9623f29cd152 WHIRLPOOL ea34bd05cc41f8e1e4af8eebfca9f1c0888c96f0dbb11df79c2cd8966b27d72f019c8ec3043ca7c9e276e015232476165a77336590ace448766a45163f654d62
DIST embassy-esim4-1.0.0.660.tar.gz 473261 SHA256 ce2f8a4e802da7e11ac3cbaf24406d9b33d4aa488f1c68bbbc8e969ec7e0b671 SHA512 623b241915217ffb314e3fc4ca6aed5e1683b78b6c76f899b67c4e5d48ce83c9920d79b1c5a1508d61856c332e614020d0804b7252c535d9622f9623f29cd152 WHIRLPOOL ea34bd05cc41f8e1e4af8eebfca9f1c0888c96f0dbb11df79c2cd8966b27d72f019c8ec3043ca7c9e276e015232476165a77336590ace448766a45163f654d62
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
deleted file mode 100644
index e1341437c8..0000000000
--- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.650.ebuild
+++ /dev/null
@@ -1,15 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-EBO_DESCRIPTION="sim4 - Alignment of cDNA and genomic DNA"
-
-AUTOTOOLS_AUTORECONF=1
-
-inherit emboss-r1
-
-KEYWORDS="amd64 x86 ~x86-linux ~ppc-macos"
-
-PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-esim4/
@ 2021-03-13 12:06 David Seifert
0 siblings, 0 replies; 7+ messages in thread
From: David Seifert @ 2021-03-13 12:06 UTC (permalink / raw
To: gentoo-commits
commit: e3f20a0cc8479fe64d3aa4fd4b674a6a61b166b2
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 13 12:04:31 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Mar 13 12:04:31 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e3f20a0c
sci-biology/embassy-esim4: Port to EAPI 7
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/embassy-esim4/embassy-esim4-1.0.0.660.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660.ebuild
index 16b6d29ebda..2538510c6bd 100644
--- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660.ebuild
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
EBO_DESCRIPTION="sim4 - Alignment of cDNA and genomic DNA"
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-esim4/
@ 2024-09-23 0:16 Eli Schwartz
0 siblings, 0 replies; 7+ messages in thread
From: Eli Schwartz @ 2024-09-23 0:16 UTC (permalink / raw
To: gentoo-commits
commit: 5d1f2bf882466a5ebb3977d062723081d25b1365
Author: Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 22 23:43:15 2024 +0000
Commit: Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Mon Sep 23 00:15:49 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5d1f2bf8
sci-biology/embassy-esim4: mark as LTO-unsafe
Upstream software has not released since 2013, stuck on CVS, with no
sourceforge activity since 7 years ago when they deleted some spam.
Closes: https://bugs.gentoo.org/862258
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>
.../embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild | 14 ++++++++++++--
1 file changed, 12 insertions(+), 2 deletions(-)
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild
index ab0fee10dc58..9da13422f06e 100644
--- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0.660-r1.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
EBO_DESCRIPTION="sim4 - Alignment of cDNA and genomic DNA"
-inherit autotools emboss-r3
+inherit autotools emboss-r3 flag-o-matic
KEYWORDS="~amd64 ~x86 ~x86-linux"
@@ -16,3 +16,13 @@ src_prepare() {
default
eautoreconf
}
+
+src_configure() {
+ # -Werror=lto-type-mismatch
+ # https://bugs.gentoo.org/862258
+ #
+ # Upstream is dead since 2013.
+ filter-lto
+
+ emboss-r3_src_configure
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
end of thread, other threads:[~2024-09-23 0:16 UTC | newest]
Thread overview: 7+ messages (download: mbox.gz follow: Atom feed
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2015-08-27 10:02 [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-esim4/ Agostino Sarubbo
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2024-09-23 0:16 Eli Schwartz
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