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* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2015-08-16 11:30 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2015-08-16 11:30 UTC (permalink / raw
  To: gentoo-commits

commit:     8c05129e3e2fce50f23c7c5c6015575f686f6e8f
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Aug 16 11:18:23 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Aug 16 11:30:22 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8c05129e

sci-biology/bamtools: Restrict Version of dev-libs/jsoncpp in deps, bug #550144 https://github.com/pezmaster31/bamtools/issues/108

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/bamtools/bamtools-2.3.0.ebuild | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/sci-biology/bamtools/bamtools-2.3.0.ebuild b/sci-biology/bamtools/bamtools-2.3.0.ebuild
index cb86750..5b6468c 100644
--- a/sci-biology/bamtools/bamtools-2.3.0.ebuild
+++ b/sci-biology/bamtools/bamtools-2.3.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -17,6 +17,7 @@ IUSE="static-libs"
 
 DEPEND="
 	>=dev-libs/jsoncpp-0.5.0-r1
+	<dev-libs/jsoncpp-1
 	sys-libs/zlib"
 RDEPEND="${DEPEND}"
 


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2015-12-13  9:54 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2015-12-13  9:54 UTC (permalink / raw
  To: gentoo-commits

commit:     8deb276adb49578cf19bce5ef8fe9394aa90db6f
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Dec 13 09:19:12 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Dec 13 09:19:12 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8deb276a

sci-biology/bamtools: Unbundle dev-libs/jsoncpp

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=568090

Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 ...tools-1.0.2.ebuild => bamtools-1.0.2-r1.ebuild} | 33 ++++++++++++++++------
 1 file changed, 24 insertions(+), 9 deletions(-)

diff --git a/sci-biology/bamtools/bamtools-1.0.2.ebuild b/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
similarity index 53%
rename from sci-biology/bamtools/bamtools-1.0.2.ebuild
rename to sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
index 08c40d0..dc1b60b 100644
--- a/sci-biology/bamtools/bamtools-1.0.2.ebuild
+++ b/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=4
+EAPI=5
 
 inherit cmake-utils
 
@@ -15,19 +15,34 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
 
-DEPEND="sys-libs/zlib"
-RDEPEND="${DEPEND}"
+RDEPEND="
+	dev-libs/jsoncpp
+	sys-libs/zlib"
+DEPEND="${RDEPEND}"
+
+src_prepare() {
+	sed \
+		-e '/third_party/d' \
+		-i src/CMakeLists.txt || die
+	rm -r src/third_party || die
+
+	sed \
+		-e 's:json.h:json/json.h:g' \
+		-i src/toolkit/bamtools_filter.cpp || die
+
+	cmake-utils_src_prepare
+}
 
 src_install() {
+	local i
 	for i in bin/bamtools-${PV} lib/libbamtools.so.${PV} lib/libbamtools-utils.so.${PV}; do
 		TMPDIR="$(pwd)" scanelf -Xr $i || die
 	done
 
 	dobin bin/bamtools
-	dolib lib/*
-	insinto /usr/include/bamtools/api
-	doins include/api/*
-	insinto /usr/include/bamtools/shared
-	doins include/shared/*
+	dolib.so lib/*so*
+	use static-libs && dolib.a lib/*a
+	insinto /usr/include/bamtools
+	doins include/api include/shared
 	dodoc README
 }


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2017-11-02  3:19 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2017-11-02  3:19 UTC (permalink / raw
  To: gentoo-commits

commit:     79838b33f1601376b91619946571004aa16be3a1
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Nov  2 03:19:37 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Nov  2 03:19:37 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=79838b33

sci-biology/bamtools: Add live ebuild

Package-Manager: Portage-2.3.11, Repoman-2.3.3

 sci-biology/bamtools/bamtools-9999.ebuild | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/sci-biology/bamtools/bamtools-9999.ebuild b/sci-biology/bamtools/bamtools-9999.ebuild
new file mode 100644
index 00000000000..e6daa826202
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-9999.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"
+else
+	SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="MIT"
+SLOT="0/${PV}" # no stable ABI yet
+
+RDEPEND="
+	>=dev-libs/jsoncpp-1.8.0:=
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}"
+
+mycmakeargs=( -DBUILD_SHARED_LIBS=ON )


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2017-11-02  3:19 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2017-11-02  3:19 UTC (permalink / raw
  To: gentoo-commits

commit:     f84da63476bd6108105d349f74e6710237a8b290
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Nov  2 03:19:34 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Nov  2 03:19:34 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f84da634

sci-biology/bamtools: Version bump to 2.4.2

Package-Manager: Portage-2.3.11, Repoman-2.3.3

 sci-biology/bamtools/Manifest              |  1 +
 sci-biology/bamtools/bamtools-2.4.2.ebuild | 27 +++++++++++++++++++++++++++
 2 files changed, 28 insertions(+)

diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index f276fed1152..45492cd4dca 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1 +1,2 @@
 DIST bamtools-2.4.1.tar.gz 540482 SHA256 933a0c1a83c88c1dac8078c0c0e82f6794c75cb927265399404bc2cc2611204b SHA512 ee674014f27b2dc0aa7c0415e8654ee7c39cfdecafbd9983d970fad6ad29f070a7ff372ee05765956cf7c8f8bb3b9763b6e537e693a0d2d64680148b1a23cfee WHIRLPOOL 6ef73f0713ebf993123eac7095061e32fe6a53db383e28a5dd8967afee92fb211ce56611de9718ce4cce84bdee14157ff968e0a6edcaead4e06b44008b78b84c
+DIST bamtools-2.4.2.tar.gz 548095 SHA256 04165bf8a7566f4be1a6e68f69bfdd9f08364ba7b0d2f6687302434641408102 SHA512 244a63609c0b10a85bba7cac210a27ea9abafba136e9c91fc789c7aa21a6cdaa7622afebc50ec8d30d4446872d5206dbd3d679ca03e95ac90771c87359cb69a0 WHIRLPOOL e1ed40d1ec47cbe97c4de160671f34095bf56f5786ebcc0cf7fb7b5e4b129d9c562b1cf19fb1d22e3ef20fa21d45f1fe50640b9d9919c01fabed044f82c9c2de

diff --git a/sci-biology/bamtools/bamtools-2.4.2.ebuild b/sci-biology/bamtools/bamtools-2.4.2.ebuild
new file mode 100644
index 00000000000..e6daa826202
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-2.4.2.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"
+else
+	SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="MIT"
+SLOT="0/${PV}" # no stable ABI yet
+
+RDEPEND="
+	>=dev-libs/jsoncpp-1.8.0:=
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}"
+
+mycmakeargs=( -DBUILD_SHARED_LIBS=ON )


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2017-11-02  3:31 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2017-11-02  3:31 UTC (permalink / raw
  To: gentoo-commits

commit:     f271f6acc55e7d323a78cc9527507834b8bcedea
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Nov  2 03:30:46 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Nov  2 03:30:46 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f271f6ac

sci-biology/bamtools: Minor fixes

* Add 'virtual/pkgconfig' to DEPEND
* Delete bundled libs for safety

Package-Manager: Portage-2.3.11, Repoman-2.3.3

 sci-biology/bamtools/bamtools-2.4.2.ebuild | 10 +++++++++-
 sci-biology/bamtools/bamtools-9999.ebuild  | 10 +++++++++-
 2 files changed, 18 insertions(+), 2 deletions(-)

diff --git a/sci-biology/bamtools/bamtools-2.4.2.ebuild b/sci-biology/bamtools/bamtools-2.4.2.ebuild
index e6daa826202..bd0157db0d1 100644
--- a/sci-biology/bamtools/bamtools-2.4.2.ebuild
+++ b/sci-biology/bamtools/bamtools-2.4.2.ebuild
@@ -22,6 +22,14 @@ SLOT="0/${PV}" # no stable ABI yet
 RDEPEND="
 	>=dev-libs/jsoncpp-1.8.0:=
 	sys-libs/zlib:="
-DEPEND="${RDEPEND}"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
 
 mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
+
+src_prepare() {
+	# delete bundled libs, just to be safe
+	rm -r src/third_party/{gtest-1.6.0,jsoncpp} || die
+
+	cmake-utils_src_prepare
+}

diff --git a/sci-biology/bamtools/bamtools-9999.ebuild b/sci-biology/bamtools/bamtools-9999.ebuild
index e6daa826202..bd0157db0d1 100644
--- a/sci-biology/bamtools/bamtools-9999.ebuild
+++ b/sci-biology/bamtools/bamtools-9999.ebuild
@@ -22,6 +22,14 @@ SLOT="0/${PV}" # no stable ABI yet
 RDEPEND="
 	>=dev-libs/jsoncpp-1.8.0:=
 	sys-libs/zlib:="
-DEPEND="${RDEPEND}"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
 
 mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
+
+src_prepare() {
+	# delete bundled libs, just to be safe
+	rm -r src/third_party/{gtest-1.6.0,jsoncpp} || die
+
+	cmake-utils_src_prepare
+}


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2017-12-23 18:45 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2017-12-23 18:45 UTC (permalink / raw
  To: gentoo-commits

commit:     a4fea019175a1a73486a1f759b0cafc875826072
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 23 18:44:09 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Dec 23 18:45:34 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a4fea019

sci-biology/bamtools: Version bump to 2.5.1

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/bamtools/Manifest              |  1 +
 sci-biology/bamtools/bamtools-2.5.1.ebuild | 69 ++++++++++++++++++++++++++++++
 2 files changed, 70 insertions(+)

diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index bd3643e1a9e..da707d0eb8f 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1 +1,2 @@
 DIST bamtools-2.4.2.tar.gz 548095 BLAKE2B 19f302eb5de9c8e3f0dc53cb9cbb359b1186b44318f7cb82e83ea995920bb30331d0873c9ad9c68601306772eab1283ead2b0eb4a8cb17cb1eade600c9cdbfac SHA512 244a63609c0b10a85bba7cac210a27ea9abafba136e9c91fc789c7aa21a6cdaa7622afebc50ec8d30d4446872d5206dbd3d679ca03e95ac90771c87359cb69a0
+DIST bamtools-2.5.1.tar.gz 549750 BLAKE2B c00b42b10e074e2c6b06f8bc9277a57080b9e99cd10080b1ad9052d59a3db353b33ecf6c30642d1651897396ea65e1e19cb15db0d58a89d4375fe34a8ec38e55 SHA512 f2c761c5bf923cf2f3db3dc54e40b4781307106b9177784f930aab619bd11fae3b343f3cfd232524580d39f0526a2a2f18efcf820fe4d9c951406bdb6b953afb

diff --git a/sci-biology/bamtools/bamtools-2.5.1.ebuild b/sci-biology/bamtools/bamtools-2.5.1.ebuild
new file mode 100644
index 00000000000..ba21654b97f
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-2.5.1.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils multibuild
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"
+else
+	SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="MIT"
+SLOT="0/${PV}" # no stable ABI yet
+IUSE="static-libs"
+
+RDEPEND="
+	>=dev-libs/jsoncpp-1.8.0:=
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+pkg_setup() {
+	[[ ${MERGE_TYPE} != binary ]] &&
+		MULTIBUILD_VARIANTS=(
+			$(usev static-libs)
+			shared
+		)
+}
+
+src_prepare() {
+	# delete bundled libs, just to be safe
+	rm -r src/third_party/{gtest-1.6.0,jsoncpp} || die
+
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+	my_configure() {
+		case "${MULTIBUILD_ID}" in
+			static*)
+				local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
+				;;
+			shared)
+				local mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
+				;;
+			*)
+				die "${MULTIBUILD_ID} is not recognized"
+				;;
+		esac
+
+		cmake-utils_src_configure
+	}
+	multibuild_foreach_variant my_configure
+}
+
+src_compile() {
+	multibuild_foreach_variant cmake-utils_src_compile
+}
+
+src_install() {
+	multibuild_foreach_variant cmake-utils_src_install
+}


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2017-12-23 18:45 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2017-12-23 18:45 UTC (permalink / raw
  To: gentoo-commits

commit:     a1b05c071c6654e2c96dac44a6b2e599a56a42c7
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 23 18:37:39 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Dec 23 18:45:28 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a1b05c07

sci-biology/bamtools: Add support for static libraries

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/bamtools/bamtools-9999.ebuild | 38 +++++++++++++++++++++++++++++--
 1 file changed, 36 insertions(+), 2 deletions(-)

diff --git a/sci-biology/bamtools/bamtools-9999.ebuild b/sci-biology/bamtools/bamtools-9999.ebuild
index bd0157db0d1..ba21654b97f 100644
--- a/sci-biology/bamtools/bamtools-9999.ebuild
+++ b/sci-biology/bamtools/bamtools-9999.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=6
 
-inherit cmake-utils
+inherit cmake-utils multibuild
 
 DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
 HOMEPAGE="https://github.com/pezmaster31/bamtools"
@@ -18,6 +18,7 @@ fi
 
 LICENSE="MIT"
 SLOT="0/${PV}" # no stable ABI yet
+IUSE="static-libs"
 
 RDEPEND="
 	>=dev-libs/jsoncpp-1.8.0:=
@@ -25,7 +26,13 @@ RDEPEND="
 DEPEND="${RDEPEND}
 	virtual/pkgconfig"
 
-mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
+pkg_setup() {
+	[[ ${MERGE_TYPE} != binary ]] &&
+		MULTIBUILD_VARIANTS=(
+			$(usev static-libs)
+			shared
+		)
+}
 
 src_prepare() {
 	# delete bundled libs, just to be safe
@@ -33,3 +40,30 @@ src_prepare() {
 
 	cmake-utils_src_prepare
 }
+
+src_configure() {
+	my_configure() {
+		case "${MULTIBUILD_ID}" in
+			static*)
+				local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
+				;;
+			shared)
+				local mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
+				;;
+			*)
+				die "${MULTIBUILD_ID} is not recognized"
+				;;
+		esac
+
+		cmake-utils_src_configure
+	}
+	multibuild_foreach_variant my_configure
+}
+
+src_compile() {
+	multibuild_foreach_variant cmake-utils_src_compile
+}
+
+src_install() {
+	multibuild_foreach_variant cmake-utils_src_install
+}


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2017-12-23 18:45 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2017-12-23 18:45 UTC (permalink / raw
  To: gentoo-commits

commit:     483f71801c8c59240ed81cb1e7bc5e3aad9a2a19
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 23 18:44:56 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Dec 23 18:45:40 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=483f7180

sci-biology/bamtools: Remove old

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/bamtools/Manifest              |  1 -
 sci-biology/bamtools/bamtools-2.4.2.ebuild | 35 ------------------------------
 2 files changed, 36 deletions(-)

diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index da707d0eb8f..424c08d5159 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1,2 +1 @@
-DIST bamtools-2.4.2.tar.gz 548095 BLAKE2B 19f302eb5de9c8e3f0dc53cb9cbb359b1186b44318f7cb82e83ea995920bb30331d0873c9ad9c68601306772eab1283ead2b0eb4a8cb17cb1eade600c9cdbfac SHA512 244a63609c0b10a85bba7cac210a27ea9abafba136e9c91fc789c7aa21a6cdaa7622afebc50ec8d30d4446872d5206dbd3d679ca03e95ac90771c87359cb69a0
 DIST bamtools-2.5.1.tar.gz 549750 BLAKE2B c00b42b10e074e2c6b06f8bc9277a57080b9e99cd10080b1ad9052d59a3db353b33ecf6c30642d1651897396ea65e1e19cb15db0d58a89d4375fe34a8ec38e55 SHA512 f2c761c5bf923cf2f3db3dc54e40b4781307106b9177784f930aab619bd11fae3b343f3cfd232524580d39f0526a2a2f18efcf820fe4d9c951406bdb6b953afb

diff --git a/sci-biology/bamtools/bamtools-2.4.2.ebuild b/sci-biology/bamtools/bamtools-2.4.2.ebuild
deleted file mode 100644
index bd0157db0d1..00000000000
--- a/sci-biology/bamtools/bamtools-2.4.2.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit cmake-utils
-
-DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
-HOMEPAGE="https://github.com/pezmaster31/bamtools"
-
-if [[ ${PV} == *9999 ]]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"
-else
-	SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86"
-fi
-
-LICENSE="MIT"
-SLOT="0/${PV}" # no stable ABI yet
-
-RDEPEND="
-	>=dev-libs/jsoncpp-1.8.0:=
-	sys-libs/zlib:="
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
-
-src_prepare() {
-	# delete bundled libs, just to be safe
-	rm -r src/third_party/{gtest-1.6.0,jsoncpp} || die
-
-	cmake-utils_src_prepare
-}


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2018-06-02 13:25 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2018-06-02 13:25 UTC (permalink / raw
  To: gentoo-commits

commit:     72c315a37ce2ecc654db481686b75c7952d4dd2d
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Jun  2 10:58:59 2018 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Jun  2 13:24:55 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=72c315a3

sci-biology/bamtools: Use ninja for building

Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-biology/bamtools/bamtools-2.5.1.ebuild | 3 ++-
 sci-biology/bamtools/bamtools-9999.ebuild  | 3 ++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/sci-biology/bamtools/bamtools-2.5.1.ebuild b/sci-biology/bamtools/bamtools-2.5.1.ebuild
index ba21654b97f..038ed14beb0 100644
--- a/sci-biology/bamtools/bamtools-2.5.1.ebuild
+++ b/sci-biology/bamtools/bamtools-2.5.1.ebuild
@@ -1,8 +1,9 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
+: ${CMAKE_MAKEFILE_GENERATOR:=ninja}
 inherit cmake-utils multibuild
 
 DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"

diff --git a/sci-biology/bamtools/bamtools-9999.ebuild b/sci-biology/bamtools/bamtools-9999.ebuild
index ba21654b97f..038ed14beb0 100644
--- a/sci-biology/bamtools/bamtools-9999.ebuild
+++ b/sci-biology/bamtools/bamtools-9999.ebuild
@@ -1,8 +1,9 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
+: ${CMAKE_MAKEFILE_GENERATOR:=ninja}
 inherit cmake-utils multibuild
 
 DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2018-12-13 14:08 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2018-12-13 14:08 UTC (permalink / raw
  To: gentoo-commits

commit:     e47f0847b07adb2e6d9bb0f3b1bd491c6f3535fa
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Dec 13 14:07:52 2018 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Dec 13 14:07:52 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e47f0847

sci-biology/bamtools: Bump to EAPI 7

Package-Manager: Portage-2.3.52, Repoman-2.3.12
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/bamtools/bamtools-2.5.1.ebuild | 22 ++++++----------------
 sci-biology/bamtools/bamtools-9999.ebuild  | 22 ++++++----------------
 2 files changed, 12 insertions(+), 32 deletions(-)

diff --git a/sci-biology/bamtools/bamtools-2.5.1.ebuild b/sci-biology/bamtools/bamtools-2.5.1.ebuild
index 038ed14beb0..84c9dc83723 100644
--- a/sci-biology/bamtools/bamtools-2.5.1.ebuild
+++ b/sci-biology/bamtools/bamtools-2.5.1.ebuild
@@ -1,9 +1,8 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-: ${CMAKE_MAKEFILE_GENERATOR:=ninja}
 inherit cmake-utils multibuild
 
 DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
@@ -24,8 +23,8 @@ IUSE="static-libs"
 RDEPEND="
 	>=dev-libs/jsoncpp-1.8.0:=
 	sys-libs/zlib:="
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
 
 pkg_setup() {
 	[[ ${MERGE_TYPE} != binary ]] &&
@@ -44,17 +43,8 @@ src_prepare() {
 
 src_configure() {
 	my_configure() {
-		case "${MULTIBUILD_ID}" in
-			static*)
-				local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
-				;;
-			shared)
-				local mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
-				;;
-			*)
-				die "${MULTIBUILD_ID} is not recognized"
-				;;
-		esac
+		[[ ${MULTIBUILD_ID} == static-libs* ]] &&
+			local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
 
 		cmake-utils_src_configure
 	}

diff --git a/sci-biology/bamtools/bamtools-9999.ebuild b/sci-biology/bamtools/bamtools-9999.ebuild
index 038ed14beb0..84c9dc83723 100644
--- a/sci-biology/bamtools/bamtools-9999.ebuild
+++ b/sci-biology/bamtools/bamtools-9999.ebuild
@@ -1,9 +1,8 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-: ${CMAKE_MAKEFILE_GENERATOR:=ninja}
 inherit cmake-utils multibuild
 
 DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
@@ -24,8 +23,8 @@ IUSE="static-libs"
 RDEPEND="
 	>=dev-libs/jsoncpp-1.8.0:=
 	sys-libs/zlib:="
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
 
 pkg_setup() {
 	[[ ${MERGE_TYPE} != binary ]] &&
@@ -44,17 +43,8 @@ src_prepare() {
 
 src_configure() {
 	my_configure() {
-		case "${MULTIBUILD_ID}" in
-			static*)
-				local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
-				;;
-			shared)
-				local mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
-				;;
-			*)
-				die "${MULTIBUILD_ID} is not recognized"
-				;;
-		esac
+		[[ ${MULTIBUILD_ID} == static-libs* ]] &&
+			local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
 
 		cmake-utils_src_configure
 	}


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2019-11-13 18:16 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2019-11-13 18:16 UTC (permalink / raw
  To: gentoo-commits

commit:     a217ed25f690d9d4ed7b492df1d0d4205830fa3f
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Wed Nov 13 18:16:02 2019 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Wed Nov 13 18:16:02 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a217ed25

sci-biology/bamtools: Remove USE="static-libs"

Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/bamtools/bamtools-2.5.1.ebuild | 33 +++---------------------------
 sci-biology/bamtools/bamtools-9999.ebuild  | 33 +++---------------------------
 2 files changed, 6 insertions(+), 60 deletions(-)

diff --git a/sci-biology/bamtools/bamtools-2.5.1.ebuild b/sci-biology/bamtools/bamtools-2.5.1.ebuild
index 84c9dc83723..b5affe9f0fa 100644
--- a/sci-biology/bamtools/bamtools-2.5.1.ebuild
+++ b/sci-biology/bamtools/bamtools-2.5.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-inherit cmake-utils multibuild
+inherit cmake-utils
 
 DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
 HOMEPAGE="https://github.com/pezmaster31/bamtools"
@@ -18,7 +18,6 @@ fi
 
 LICENSE="MIT"
 SLOT="0/${PV}" # no stable ABI yet
-IUSE="static-libs"
 
 RDEPEND="
 	>=dev-libs/jsoncpp-1.8.0:=
@@ -26,35 +25,9 @@ RDEPEND="
 DEPEND="${RDEPEND}"
 BDEPEND="virtual/pkgconfig"
 
-pkg_setup() {
-	[[ ${MERGE_TYPE} != binary ]] &&
-		MULTIBUILD_VARIANTS=(
-			$(usev static-libs)
-			shared
-		)
-}
-
 src_prepare() {
 	# delete bundled libs, just to be safe
-	rm -r src/third_party/{gtest-1.6.0,jsoncpp} || die
+	rm -rf src/third_party/{gtest-1.6.0,jsoncpp} || die
 
 	cmake-utils_src_prepare
 }
-
-src_configure() {
-	my_configure() {
-		[[ ${MULTIBUILD_ID} == static-libs* ]] &&
-			local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
-
-		cmake-utils_src_configure
-	}
-	multibuild_foreach_variant my_configure
-}
-
-src_compile() {
-	multibuild_foreach_variant cmake-utils_src_compile
-}
-
-src_install() {
-	multibuild_foreach_variant cmake-utils_src_install
-}

diff --git a/sci-biology/bamtools/bamtools-9999.ebuild b/sci-biology/bamtools/bamtools-9999.ebuild
index 84c9dc83723..b5affe9f0fa 100644
--- a/sci-biology/bamtools/bamtools-9999.ebuild
+++ b/sci-biology/bamtools/bamtools-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-inherit cmake-utils multibuild
+inherit cmake-utils
 
 DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
 HOMEPAGE="https://github.com/pezmaster31/bamtools"
@@ -18,7 +18,6 @@ fi
 
 LICENSE="MIT"
 SLOT="0/${PV}" # no stable ABI yet
-IUSE="static-libs"
 
 RDEPEND="
 	>=dev-libs/jsoncpp-1.8.0:=
@@ -26,35 +25,9 @@ RDEPEND="
 DEPEND="${RDEPEND}"
 BDEPEND="virtual/pkgconfig"
 
-pkg_setup() {
-	[[ ${MERGE_TYPE} != binary ]] &&
-		MULTIBUILD_VARIANTS=(
-			$(usev static-libs)
-			shared
-		)
-}
-
 src_prepare() {
 	# delete bundled libs, just to be safe
-	rm -r src/third_party/{gtest-1.6.0,jsoncpp} || die
+	rm -rf src/third_party/{gtest-1.6.0,jsoncpp} || die
 
 	cmake-utils_src_prepare
 }
-
-src_configure() {
-	my_configure() {
-		[[ ${MULTIBUILD_ID} == static-libs* ]] &&
-			local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
-
-		cmake-utils_src_configure
-	}
-	multibuild_foreach_variant my_configure
-}
-
-src_compile() {
-	multibuild_foreach_variant cmake-utils_src_compile
-}
-
-src_install() {
-	multibuild_foreach_variant cmake-utils_src_install
-}


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2020-04-14  8:35 Joonas Niilola
  0 siblings, 0 replies; 14+ messages in thread
From: Joonas Niilola @ 2020-04-14  8:35 UTC (permalink / raw
  To: gentoo-commits

commit:     7bbdbfd194355a211e18c4ef5f8a7e21cc024ba3
Author:     Joonas Niilola <juippis <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 14 07:57:34 2020 +0000
Commit:     Joonas Niilola <juippis <AT> gentoo <DOT> org>
CommitDate: Tue Apr 14 08:34:31 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7bbdbfd1

sci-biology/bamtools: remove inactive maintainer

Signed-off-by: Joonas Niilola <juippis <AT> gentoo.org>

 sci-biology/bamtools/metadata.xml | 8 --------
 1 file changed, 8 deletions(-)

diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml
index f703e6a8289..9aa0cee0cf7 100644
--- a/sci-biology/bamtools/metadata.xml
+++ b/sci-biology/bamtools/metadata.xml
@@ -1,18 +1,10 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-  <maintainer type="person">
-    <email>mmokrejs@gmail.com</email>
-    <name>Martin Mokrejs</name>
-  </maintainer>
   <maintainer type="project">
     <email>sci-biology@gentoo.org</email>
     <name>Gentoo Biology Project</name>
   </maintainer>
-  <maintainer type="project">
-    <email>proxy-maint@gentoo.org</email>
-    <name>Proxy Maintainers</name>
-  </maintainer>
   <longdescription>BAM (Binary Alignment/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files.</longdescription>
   <upstream>
     <remote-id type="github">pezmaster31/bamtools</remote-id>


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2021-06-20 20:04 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2021-06-20 20:04 UTC (permalink / raw
  To: gentoo-commits

commit:     76c0d35a1a7694289c8bf7fb3ebc19a159546e86
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 20 20:03:49 2021 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 20 20:03:49 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=76c0d35a

sci-biology/bamtools: add 2.5.2

Bug: https://bugs.gentoo.org/787200
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/bamtools/Manifest              |  1 +
 sci-biology/bamtools/bamtools-2.5.2.ebuild | 33 ++++++++++++++++++++++++++++++
 2 files changed, 34 insertions(+)

diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index 424c08d5159..e6d9b12cb13 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1 +1,2 @@
 DIST bamtools-2.5.1.tar.gz 549750 BLAKE2B c00b42b10e074e2c6b06f8bc9277a57080b9e99cd10080b1ad9052d59a3db353b33ecf6c30642d1651897396ea65e1e19cb15db0d58a89d4375fe34a8ec38e55 SHA512 f2c761c5bf923cf2f3db3dc54e40b4781307106b9177784f930aab619bd11fae3b343f3cfd232524580d39f0526a2a2f18efcf820fe4d9c951406bdb6b953afb
+DIST bamtools-2.5.2.tar.gz 245729 BLAKE2B 5034ea1ec16b205488e421461ed74d8a98eae87eb7fc061e5928ad15512497a5338c9dbacbde51009c940acd55c25fccc2f3be2840d2821a8755a2a0b0370944 SHA512 540a4664abfbd1304600c17d47424c312a46e4238b0f0868f4037ddcc54c4487424e3d7820153084b3b512be8a4603e3ec5377a73311a617061460de1bfe49ef

diff --git a/sci-biology/bamtools/bamtools-2.5.2.ebuild b/sci-biology/bamtools/bamtools-2.5.2.ebuild
new file mode 100644
index 00000000000..a809a651df6
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-2.5.2.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit cmake
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"
+else
+	SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="MIT"
+SLOT="0/${PV}" # no stable ABI yet
+
+RDEPEND="
+	>=dev-libs/jsoncpp-1.8.0:=
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
+
+src_prepare() {
+	# delete bundled libs, just to be safe
+	rm -rf src/third_party/{gtest-1.6.0,jsoncpp} || die
+
+	cmake_src_prepare
+}


^ permalink raw reply related	[flat|nested] 14+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/
@ 2021-06-20 20:04 David Seifert
  0 siblings, 0 replies; 14+ messages in thread
From: David Seifert @ 2021-06-20 20:04 UTC (permalink / raw
  To: gentoo-commits

commit:     92bb3cbc3bf6874aa00912882ef4fccc0d0c1223
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 20 20:03:52 2021 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 20 20:03:52 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=92bb3cbc

sci-biology/bamtools: drop 2.5.1

Closes: https://bugs.gentoo.org/787200
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/bamtools/Manifest              |  1 -
 sci-biology/bamtools/bamtools-2.5.1.ebuild | 33 ------------------------------
 2 files changed, 34 deletions(-)

diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index e6d9b12cb13..5076fcaf183 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1,2 +1 @@
-DIST bamtools-2.5.1.tar.gz 549750 BLAKE2B c00b42b10e074e2c6b06f8bc9277a57080b9e99cd10080b1ad9052d59a3db353b33ecf6c30642d1651897396ea65e1e19cb15db0d58a89d4375fe34a8ec38e55 SHA512 f2c761c5bf923cf2f3db3dc54e40b4781307106b9177784f930aab619bd11fae3b343f3cfd232524580d39f0526a2a2f18efcf820fe4d9c951406bdb6b953afb
 DIST bamtools-2.5.2.tar.gz 245729 BLAKE2B 5034ea1ec16b205488e421461ed74d8a98eae87eb7fc061e5928ad15512497a5338c9dbacbde51009c940acd55c25fccc2f3be2840d2821a8755a2a0b0370944 SHA512 540a4664abfbd1304600c17d47424c312a46e4238b0f0868f4037ddcc54c4487424e3d7820153084b3b512be8a4603e3ec5377a73311a617061460de1bfe49ef

diff --git a/sci-biology/bamtools/bamtools-2.5.1.ebuild b/sci-biology/bamtools/bamtools-2.5.1.ebuild
deleted file mode 100644
index 78a0c3cd255..00000000000
--- a/sci-biology/bamtools/bamtools-2.5.1.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit cmake
-
-DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
-HOMEPAGE="https://github.com/pezmaster31/bamtools"
-
-if [[ ${PV} == *9999 ]]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"
-else
-	SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86"
-fi
-
-LICENSE="MIT"
-SLOT="0/${PV}" # no stable ABI yet
-
-RDEPEND="
-	>=dev-libs/jsoncpp-1.8.0:=
-	sys-libs/zlib:="
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-src_prepare() {
-	# delete bundled libs, just to be safe
-	rm -rf src/third_party/{gtest-1.6.0,jsoncpp} || die
-
-	cmake_src_prepare
-}


^ permalink raw reply related	[flat|nested] 14+ messages in thread
end of thread, other threads:[~2021-06-20 20:04 UTC | newest]

Thread overview: 14+ messages (download: mbox.gz follow: Atom feed
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2015-08-16 11:30 [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/ Justin Lecher
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2015-12-13  9:54 Justin Lecher
2017-11-02  3:19 David Seifert
2017-11-02  3:19 David Seifert
2017-11-02  3:31 David Seifert
2017-12-23 18:45 David Seifert
2017-12-23 18:45 David Seifert
2017-12-23 18:45 David Seifert
2018-06-02 13:25 David Seifert
2018-12-13 14:08 David Seifert
2019-11-13 18:16 David Seifert
2020-04-14  8:35 Joonas Niilola
2021-06-20 20:04 David Seifert
2021-06-20 20:04 David Seifert

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