* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2014-01-06 18:33 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2014-01-06 18:33 UTC (permalink / raw
To: gentoo-commits
commit: 0af68e434e9f5c0bbbd6e04e57253377937ed2d9
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 6 18:23:34 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 6 18:23:34 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0af68e43
sci-libs/nipype: Switch from git-2 to git-r3
Package-Manager: portage-2.2.8
---
sci-libs/nipype/ChangeLog | 8 ++++++++
sci-libs/nipype/metadata.xml | 12 ++++++------
sci-libs/nipype/nipype-9999.ebuild | 9 +++++----
3 files changed, 19 insertions(+), 10 deletions(-)
diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
new file mode 100644
index 0000000..e4f160f
--- /dev/null
+++ b/sci-libs/nipype/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-libs/nipype
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> nipype-9999.ebuild,
+ metadata.xml:
+ Switch from git-2 to git-r3
+
diff --git a/sci-libs/nipype/metadata.xml b/sci-libs/nipype/metadata.xml
index d41e11f..1f3c091 100644
--- a/sci-libs/nipype/metadata.xml
+++ b/sci-libs/nipype/metadata.xml
@@ -1,12 +1,12 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
- <email>h.chr@mail.ru</email>
- <name>Horea Christian</name>
-</maintainer>
-<longdescription lang="en">
+ <herd>sci</herd>
+ <maintainer>
+ <email>h.chr@mail.ru</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <longdescription lang="en">
Nipype, an open-source, community-developed initiative under the
umbrella of NiPy, is a Python project that provides a uniform interface
to existing neuroimaging software and facilitates interaction between
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 7afb3b5..9fd57b5 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_image/scikits_image-0.8.2.ebuild,v 1.3 2013/06/18 04:33:25 patrick Exp $
@@ -8,14 +8,17 @@ EAPI=5
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} )
PYTHON_COMPAT=( python{2_6,2_7} )
-inherit distutils-r1 git-2
+inherit distutils-r1 git-r3
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI=""
EGIT_REPO_URI="https://github.com/nipy/nipype"
LICENSE="BSD"
SLOT="0"
+KEYWORDS=""
+IUSE=""
DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
@@ -29,5 +32,3 @@ RDEPEND="
python_test() {
nosetests -v || die
}
-
-
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2014-06-16 10:24 Jauhien Piatlicki
0 siblings, 0 replies; 50+ messages in thread
From: Jauhien Piatlicki @ 2014-06-16 10:24 UTC (permalink / raw
To: gentoo-commits
commit: 0d4239a875340d8cb932de83e21b97d8e5feb57a
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Wed Jun 11 12:00:28 2014 +0000
Commit: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
CommitDate: Wed Jun 11 12:00:28 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0d4239a8
Added vital dep
---
sci-libs/nipype/nipype-9999.ebuild | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index a9ca437..75495c8 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -27,7 +27,8 @@ DEPEND="
RDEPEND="
sci-libs/scipy[${PYTHON_USEDEP}]
dev-python/traits[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]"
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]"
python_test() {
nosetests -v || die
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2015-06-07 18:33 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2015-06-07 18:33 UTC (permalink / raw
To: gentoo-commits
commit: e04095ce38eee7d280d766c76e90fb707443de83
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Sat Jun 6 07:54:34 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun 6 07:54:34 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e04095ce
no longer depending on outdated version
Package-Manager: portage-2.2.20
sci-libs/nipype/ChangeLog | 6 ++++--
sci-libs/nipype/nipype-9999.ebuild | 4 ++--
2 files changed, 6 insertions(+), 4 deletions(-)
diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
index e4f160f..09e1407 100644
--- a/sci-libs/nipype/ChangeLog
+++ b/sci-libs/nipype/ChangeLog
@@ -1,8 +1,10 @@
# ChangeLog for sci-libs/nipype
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Jun 2015; Horea Christian <h.chr@mail.ru> nipype-9999.ebuild:
+ no longer depending on outdated version
+
06 Jan 2014; Justin Lecher <jlec@gentoo.org> nipype-9999.ebuild,
metadata.xml:
Switch from git-2 to git-r3
-
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 0b833f8..018340f 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -23,7 +23,7 @@ IUSE=""
DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
- >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]"
+ sci-libs/nibabel[${PYTHON_USEDEP}]"
RDEPEND="
sci-libs/scipy[${PYTHON_USEDEP}]
dev-python/traits[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2015-07-10 3:59 Nicolas Bock
0 siblings, 0 replies; 50+ messages in thread
From: Nicolas Bock @ 2015-07-10 3:59 UTC (permalink / raw
To: gentoo-commits
commit: 37dc69b5f66bf2e8bb1594368f263f49bc2704ff
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Mon Jul 6 09:52:40 2015 +0000
Commit: Nicolas Bock <nicolasbock <AT> gentoo <DOT> org>
CommitDate: Mon Jul 6 09:52:40 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=37dc69b5
need sqlite3 module
Package-Manager: portage-2.2.20
sci-libs/nipype/ChangeLog | 3 +++
sci-libs/nipype/nipype-9999.ebuild | 1 +
2 files changed, 4 insertions(+)
diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
index 09e1407..0b564ed 100644
--- a/sci-libs/nipype/ChangeLog
+++ b/sci-libs/nipype/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Jul 2015; Horea Christian <h.chr@mail.ru> nipype-9999.ebuild:
+ need sqlite3 module
+
06 Jun 2015; Horea Christian <h.chr@mail.ru> nipype-9999.ebuild:
no longer depending on outdated version
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 018340f..a9eea5a 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -25,6 +25,7 @@ DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]"
RDEPEND="
+ dev-lang/python[sqlite]
sci-libs/scipy[${PYTHON_USEDEP}]
dev-python/traits[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2015-08-04 9:16 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2015-08-04 9:16 UTC (permalink / raw
To: gentoo-commits
commit: 9462158de8e19f8d43b5f870d10cfde1f1415dc5
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Mon Jul 27 22:03:52 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jul 27 22:03:52 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9462158d
setting USE requirement before inherit
Package-Manager: portage-2.2.20
sci-libs/nipype/ChangeLog | 3 +++
sci-libs/nipype/nipype-9999.ebuild | 3 +--
2 files changed, 4 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
index eaefd2b..154db22 100644
--- a/sci-libs/nipype/ChangeLog
+++ b/sci-libs/nipype/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 27 Jul 2015; <chymera@gentoo.org> nipype-9999.ebuild:
+ setting USE requirement before inherit
+
26 Jul 2015; <chymera@gentoo.org> nipype-9999.ebuild:
fixed USE flag requirement
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index b886896..47b261c 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -7,6 +7,7 @@ EAPI=5
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} )
PYTHON_COMPAT=( python2_7 )
+PYTHON_REQ_USE="sqlite"
inherit distutils-r1 git-r3
@@ -30,8 +31,6 @@ RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]"
-PYTHON_REQ_USE="sqlite"
-
python_test() {
nosetests -v || die
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2015-08-04 9:16 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2015-08-04 9:16 UTC (permalink / raw
To: gentoo-commits
commit: 6825043656a0f6c29e38013cfcad65ca7d907751
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Sun Jul 26 22:00:07 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jul 26 22:00:07 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=68250436
fixed USE flag requirement
Package-Manager: portage-2.2.20
sci-libs/nipype/ChangeLog | 3 +++
sci-libs/nipype/nipype-9999.ebuild | 4 +++-
2 files changed, 6 insertions(+), 1 deletion(-)
diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
index 0b564ed..eaefd2b 100644
--- a/sci-libs/nipype/ChangeLog
+++ b/sci-libs/nipype/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 26 Jul 2015; <chymera@gentoo.org> nipype-9999.ebuild:
+ fixed USE flag requirement
+
06 Jul 2015; Horea Christian <h.chr@mail.ru> nipype-9999.ebuild:
need sqlite3 module
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index a9eea5a..b886896 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -25,12 +25,14 @@ DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]"
RDEPEND="
- dev-lang/python[sqlite]
sci-libs/scipy[${PYTHON_USEDEP}]
dev-python/traits[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]"
+PYTHON_REQ_USE="sqlite"
+
+
python_test() {
nosetests -v || die
}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2015-09-21 16:05 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2015-09-21 16:05 UTC (permalink / raw
To: gentoo-commits
commit: 34bef74fe52c98dcd5f8677972b4bbd9b6de532a
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 16:04:51 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 16:04:51 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=34bef74f
sci-libs/nipype: Drop empty lines
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-libs/nipype/nipype-9999.ebuild | 1 -
1 file changed, 1 deletion(-)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 414e447..4ece8a8 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -31,7 +31,6 @@ RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]"
-
python_test() {
nosetests -v || die
}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2015-11-10 7:09 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2015-11-10 7:09 UTC (permalink / raw
To: gentoo-commits
commit: a478cc96c142a3c66ef501b9a2b14f95177504bd
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Tue Nov 10 00:50:32 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Nov 10 00:50:32 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a478cc96
sci-libs/nipype: added keyword
Package-Manager: portage-2.2.23
sci-libs/nipype/ChangeLog | 3 +++
sci-libs/nipype/nipype-0.11.0.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
index 755a95f..d90d1d9 100644
--- a/sci-libs/nipype/ChangeLog
+++ b/sci-libs/nipype/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 10 Nov 2015; Horea Christian <h.chr@mail.ru> nipype-0.11.0.ebuild:
+ sci-libs/nipype: added keyword
+
*nipype-0.11.0 (10 Nov 2015)
10 Nov 2015; Horea Christian <h.chr@mail.ru> +nipype-0.11.0.ebuild:
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index 7751c6c..879f960 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -17,7 +17,7 @@ SRC_URI="https://github.com/nipy/nipype/archive/0.11.0.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
IUSE=""
DEPEND="
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2015-11-10 7:09 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2015-11-10 7:09 UTC (permalink / raw
To: gentoo-commits
commit: e3c66a03567514092b9e5adec59ce9335adc1416
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Tue Nov 10 00:46:45 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Nov 10 00:46:45 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e3c66a03
sci-libs/nipype: new versioned version
Package-Manager: portage-2.2.23
sci-libs/nipype/ChangeLog | 5 +++++
sci-libs/nipype/nipype-0.11.0.ebuild | 35 +++++++++++++++++++++++++++++++++++
2 files changed, 40 insertions(+)
diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
index 1cc3228..755a95f 100644
--- a/sci-libs/nipype/ChangeLog
+++ b/sci-libs/nipype/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+*nipype-0.11.0 (10 Nov 2015)
+
+ 10 Nov 2015; Horea Christian <h.chr@mail.ru> +nipype-0.11.0.ebuild:
+ sci-libs/nipype: new versioned version
+
27 Jul 2015; <chymera@gentoo.org> nipype-9999.ebuild:
setting USE requirement before inherit
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
new file mode 100644
index 0000000..7751c6c
--- /dev/null
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+# pyamg missing py3 support
+# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} )
+PYTHON_COMPAT=( python2_7 )
+PYTHON_REQ_USE="sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/0.11.0.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]"
+RDEPEND="
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/traits[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]"
+
+python_test() {
+ nosetests -v || die
+}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2015-11-12 7:27 Marius Brehler
0 siblings, 0 replies; 50+ messages in thread
From: Marius Brehler @ 2015-11-12 7:27 UTC (permalink / raw
To: gentoo-commits
commit: 8f289729909a3196582cc725acb6e75f3d5e1c0a
Author: Horea Christian <h.chr <AT> mail <DOT> ru>
AuthorDate: Wed Nov 11 21:58:39 2015 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Wed Nov 11 21:58:39 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8f289729
sci-libs/nipype: added dep on future
Package-Manager: portage-2.2.23
sci-libs/nipype/ChangeLog | 3 +++
sci-libs/nipype/nipype-9999.ebuild | 1 +
2 files changed, 4 insertions(+)
diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
index d90d1d9..1214c8e 100644
--- a/sci-libs/nipype/ChangeLog
+++ b/sci-libs/nipype/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 11 Nov 2015; Horea Christian <h.chr@mail.ru> nipype-9999.ebuild:
+ sci-libs/nipype: added dep on future
+
10 Nov 2015; Horea Christian <h.chr@mail.ru> nipype-0.11.0.ebuild:
sci-libs/nipype: added keyword
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 4ece8a8..380ae54 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -22,6 +22,7 @@ KEYWORDS=""
IUSE=""
DEPEND="
+ dev-python/future[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]"
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-02-21 15:16 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2016-02-21 15:16 UTC (permalink / raw
To: gentoo-commits
commit: 096d8640fc5f5de1371a3e4470ced74b6e1cdde8
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Sun Feb 21 04:32:01 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 21 04:32:01 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=096d8640
sci-libs/nipype: added and sorted deps
Package-Manager: portage-2.2.27
sci-libs/nipype/nipype-0.11.0.ebuild | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index 879f960..74066fb 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -21,14 +21,15 @@ KEYWORDS="~amd64"
IUSE=""
DEPEND="
- dev-python/setuptools[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]"
RDEPEND="
- sci-libs/scipy[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]"
+ dev-python/pydotplus[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/traits[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]"
python_test() {
nosetests -v || die
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-02-21 15:16 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2016-02-21 15:16 UTC (permalink / raw
To: gentoo-commits
commit: 505ba53d90615e85acfcc64f33fee33f5b8473d5
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Sun Feb 21 04:29:59 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 21 04:29:59 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=505ba53d
sci-libs/nipype: dded deps
Package-Manager: portage-2.2.27
sci-libs/nipype/nipype-9999.ebuild | 10 ++++++----
1 file changed, 6 insertions(+), 4 deletions(-)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 380ae54..ce971d1 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -23,14 +23,16 @@ IUSE=""
DEPEND="
dev-python/future[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
+ dev-python/prov[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]"
RDEPEND="
- sci-libs/scipy[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]"
+ dev-python/pydotplus[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/traits[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]"
python_test() {
nosetests -v || die
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-05-07 9:37 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2016-05-07 9:37 UTC (permalink / raw
To: gentoo-commits
commit: 2248e6e5482aefdb38180bb6e2cff4545ac351ec
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Apr 26 16:47:09 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Apr 26 16:47:09 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2248e6e5
sci-libs/nipype: added python 3_4 compatibility
Package-Manager: portage-2.2.28
sci-libs/nipype/nipype-0.11.0.ebuild | 2 +-
sci-libs/nipype/nipype-9999.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index 74066fb..0b9dc1f 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -5,7 +5,7 @@
EAPI=5
# pyamg missing py3 support
-# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} )
+# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
PYTHON_COMPAT=( python2_7 )
PYTHON_REQ_USE="sqlite"
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index ce971d1..21eff08 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -5,7 +5,7 @@
EAPI=5
# pyamg missing py3 support
-# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} )
+# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
PYTHON_COMPAT=( python2_7 )
PYTHON_REQ_USE="sqlite"
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-07-20 17:48 Christoph Junghans
0 siblings, 0 replies; 50+ messages in thread
From: Christoph Junghans @ 2016-07-20 17:48 UTC (permalink / raw
To: gentoo-commits
commit: 985547a76c2c2072b0e29ea4651729174794c91f
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Jul 19 14:24:15 2016 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Jul 19 14:24:15 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=985547a7
sci-libs/nipype: corrected PV reference and bumped to newest version
Package-Manager: portage-2.3.0
sci-libs/nipype/nipype-0.11.0.ebuild | 2 +-
sci-libs/nipype/{nipype-0.11.0.ebuild => nipype-0.12.0.ebuild} | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index ea3f1c1..7afa841 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -13,7 +13,7 @@ inherit distutils-r1
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/{PV}.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild
similarity index 91%
copy from sci-libs/nipype/nipype-0.11.0.ebuild
copy to sci-libs/nipype/nipype-0.12.0.ebuild
index ea3f1c1..7afa841 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.12.0.ebuild
@@ -13,7 +13,7 @@ inherit distutils-r1
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/{PV}.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-07-20 17:48 Christoph Junghans
0 siblings, 0 replies; 50+ messages in thread
From: Christoph Junghans @ 2016-07-20 17:48 UTC (permalink / raw
To: gentoo-commits
commit: 57e1361bcc6941bf647da439bd8f69deeffd058a
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Jul 19 14:21:48 2016 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Jul 19 14:21:48 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=57e1361b
sci-libs/nipype: taking version number from ebuild filename
Package-Manager: portage-2.3.0
sci-libs/nipype/nipype-0.11.0.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index 0b9dc1f..ea3f1c1 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -13,7 +13,7 @@ inherit distutils-r1
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/0.11.0.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/nipy/nipype/archive/{PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-08-09 12:14 Marius Brehler
0 siblings, 0 replies; 50+ messages in thread
From: Marius Brehler @ 2016-08-09 12:14 UTC (permalink / raw
To: gentoo-commits
commit: 6af335f648ecc5db0d49385d2bc3213abf8a9e23
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Mon Aug 8 11:28:26 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Mon Aug 8 11:28:26 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6af335f6
Nipype - version bump and EAPI upgrade (#656)
* sci-libs/nipype: version bump
Package-Manager: portage-2.3.0
* sci-libs/nipype: updted EAPI version
Package-Manager: portage-2.3.0
sci-libs/nipype/nipype-0.11.0.ebuild | 2 +-
sci-libs/nipype/nipype-0.12.0.ebuild | 2 +-
sci-libs/nipype/{nipype-0.11.0.ebuild => nipype-0.12.1.ebuild} | 2 +-
sci-libs/nipype/nipype-9999.ebuild | 4 ++--
4 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index 7afa841..ed497f0 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -2,7 +2,7 @@
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild
index 7afa841..ed497f0 100644
--- a/sci-libs/nipype/nipype-0.12.0.ebuild
+++ b/sci-libs/nipype/nipype-0.12.0.ebuild
@@ -2,7 +2,7 @@
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild
similarity index 99%
copy from sci-libs/nipype/nipype-0.11.0.ebuild
copy to sci-libs/nipype/nipype-0.12.1.ebuild
index 7afa841..ed497f0 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.12.1.ebuild
@@ -2,7 +2,7 @@
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 21eff08..7c8c8ed 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-08-31 6:56 Marius Brehler
0 siblings, 0 replies; 50+ messages in thread
From: Marius Brehler @ 2016-08-31 6:56 UTC (permalink / raw
To: gentoo-commits
commit: 0fd3d84da5c7b888c1ef62596cb9cee60e17279e
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Aug 30 16:08:53 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Tue Aug 30 16:08:53 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0fd3d84d
sci-libs/nipype: added dep (#665)
Package-Manager: portage-2.3.0
sci-libs/nipype/nipype-0.12.0.ebuild | 4 +++-
sci-libs/nipype/nipype-0.12.1.ebuild | 4 +++-
sci-libs/nipype/nipype-9999.ebuild | 4 +++-
3 files changed, 9 insertions(+), 3 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild
index ed497f0..4f94eba 100644
--- a/sci-libs/nipype/nipype-0.12.0.ebuild
+++ b/sci-libs/nipype/nipype-0.12.0.ebuild
@@ -29,7 +29,9 @@ RDEPEND="
dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]
dev-python/traits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]"
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/simplejson[${PYTHON_USEDEP}]
+ "
python_test() {
nosetests -v || die
diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild
index ed497f0..4f94eba 100644
--- a/sci-libs/nipype/nipype-0.12.1.ebuild
+++ b/sci-libs/nipype/nipype-0.12.1.ebuild
@@ -29,7 +29,9 @@ RDEPEND="
dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]
dev-python/traits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]"
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/simplejson[${PYTHON_USEDEP}]
+ "
python_test() {
nosetests -v || die
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 7c8c8ed..336b511 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -32,7 +32,9 @@ RDEPEND="
dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]
dev-python/traits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]"
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/simplejson[${PYTHON_USEDEP}]
+ "
python_test() {
nosetests -v || die
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-09-06 0:18 Christoph Junghans
0 siblings, 0 replies; 50+ messages in thread
From: Christoph Junghans @ 2016-09-06 0:18 UTC (permalink / raw
To: gentoo-commits
commit: 457be48d11155ce46b8b4ad55842d30805fcac1a
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Mon Sep 5 19:01:17 2016 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Mon Sep 5 19:01:17 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=457be48d
sci-libs/nipype: added threads REQ_USE (#668)
Package-Manager: portage-2.3.0
sci-libs/nipype/nipype-0.11.0.ebuild | 2 +-
sci-libs/nipype/nipype-0.12.0.ebuild | 2 +-
sci-libs/nipype/nipype-0.12.1.ebuild | 2 +-
sci-libs/nipype/nipype-9999.ebuild | 2 +-
4 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index ed497f0..ffc2d4e 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -7,7 +7,7 @@ EAPI=6
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
PYTHON_COMPAT=( python2_7 )
-PYTHON_REQ_USE="sqlite"
+PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild
index 4f94eba..93eede9 100644
--- a/sci-libs/nipype/nipype-0.12.0.ebuild
+++ b/sci-libs/nipype/nipype-0.12.0.ebuild
@@ -7,7 +7,7 @@ EAPI=6
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
PYTHON_COMPAT=( python2_7 )
-PYTHON_REQ_USE="sqlite"
+PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild
index 4f94eba..93eede9 100644
--- a/sci-libs/nipype/nipype-0.12.1.ebuild
+++ b/sci-libs/nipype/nipype-0.12.1.ebuild
@@ -7,7 +7,7 @@ EAPI=6
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
PYTHON_COMPAT=( python2_7 )
-PYTHON_REQ_USE="sqlite"
+PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 336b511..126e8f4 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -7,7 +7,7 @@ EAPI=6
# pyamg missing py3 support
# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
PYTHON_COMPAT=( python2_7 )
-PYTHON_REQ_USE="sqlite"
+PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1 git-r3
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-10-12 6:30 Marius Brehler
0 siblings, 0 replies; 50+ messages in thread
From: Marius Brehler @ 2016-10-12 6:30 UTC (permalink / raw
To: gentoo-commits
commit: 7a61a45ee33b3b33ebaab456a1cc9c3fc625ffd2
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Fri Sep 23 13:15:21 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Fri Sep 23 13:15:21 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7a61a45e
Nipype (#676)
* sci-libs/nipype: updated python compatibility
Package-Manager: portage-2.3.0
* sci-libs/nipype: added test flag
Package-Manager: portage-2.3.0
* sci-libs/nipype: added test dependency
Package-Manager: portage-2.3.0
sci-libs/nipype/nipype-0.11.0.ebuild | 4 +---
sci-libs/nipype/nipype-0.12.0.ebuild | 10 +++++-----
sci-libs/nipype/nipype-0.12.1.ebuild | 10 +++++-----
sci-libs/nipype/nipype-9999.ebuild | 10 +++++-----
4 files changed, 16 insertions(+), 18 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index ffc2d4e..8ead439 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -4,9 +4,7 @@
EAPI=6
-# pyamg missing py3 support
-# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild
index 93eede9..b2f214e 100644
--- a/sci-libs/nipype/nipype-0.12.0.ebuild
+++ b/sci-libs/nipype/nipype-0.12.0.ebuild
@@ -4,9 +4,7 @@
EAPI=6
-# pyamg missing py3 support
-# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
@@ -18,12 +16,14 @@ SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64"
-IUSE=""
+IUSE="test"
DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]"
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ test? ( dev-python/mock[${PYTHON_USEDEP}] )
+ "
RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild
index 93eede9..b2f214e 100644
--- a/sci-libs/nipype/nipype-0.12.1.ebuild
+++ b/sci-libs/nipype/nipype-0.12.1.ebuild
@@ -4,9 +4,7 @@
EAPI=6
-# pyamg missing py3 support
-# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
@@ -18,12 +16,14 @@ SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64"
-IUSE=""
+IUSE="test"
DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]"
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ test? ( dev-python/mock[${PYTHON_USEDEP}] )
+ "
RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 126e8f4..e9fed21 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -4,9 +4,7 @@
EAPI=6
-# pyamg missing py3 support
-# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1 git-r3
@@ -19,14 +17,16 @@ EGIT_REPO_URI="https://github.com/nipy/nipype"
LICENSE="BSD"
SLOT="0"
KEYWORDS=""
-IUSE=""
+IUSE="test"
DEPEND="
dev-python/future[${PYTHON_USEDEP}]
dev-python/prov[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]"
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ test? ( dev-python/mock[${PYTHON_USEDEP}] )
+ "
RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-10-18 17:30 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2016-10-18 17:30 UTC (permalink / raw
To: gentoo-commits
commit: 67d29b62ff08752595e59287208212ad4eace2aa
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Oct 18 12:15:48 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Oct 18 12:15:48 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=67d29b62
sci-libs/nipype: added missing dep (#694)
Package-Manager: portage-2.3.2
sci-libs/nipype/nipype-0.11.0.ebuild | 1 +
sci-libs/nipype/nipype-0.12.0.ebuild | 1 +
sci-libs/nipype/nipype-0.12.1.ebuild | 1 +
3 files changed, 3 insertions(+)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
index 8ead439..1c4bf88 100644
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ b/sci-libs/nipype/nipype-0.11.0.ebuild
@@ -19,6 +19,7 @@ KEYWORDS="~amd64"
IUSE=""
DEPEND="
+ dev-python/future[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]"
diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild
index b2f214e..c9a783d 100644
--- a/sci-libs/nipype/nipype-0.12.0.ebuild
+++ b/sci-libs/nipype/nipype-0.12.0.ebuild
@@ -19,6 +19,7 @@ KEYWORDS="~amd64"
IUSE="test"
DEPEND="
+ dev-python/future[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]
diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild
index b2f214e..c9a783d 100644
--- a/sci-libs/nipype/nipype-0.12.1.ebuild
+++ b/sci-libs/nipype/nipype-0.12.1.ebuild
@@ -19,6 +19,7 @@ KEYWORDS="~amd64"
IUSE="test"
DEPEND="
+ dev-python/future[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-10-30 15:47 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2016-10-30 15:47 UTC (permalink / raw
To: gentoo-commits
commit: 9fccc5598e579132bff44d6796e5ad2584c7c242
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Sun Oct 30 15:30:58 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Oct 30 15:30:58 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9fccc559
sci-libs/nipype: setup_requires patch for python3 and configparser (#697)
* sci-libs/nipype: setup_requires patch for python3 and configparser
Package-Manager: portage-2.3.2
* sci-libs/nipype: fixed indentation
Package-Manager: portage-2.3.2
sci-libs/nipype/nipype-0.12.0.ebuild | 2 +-
sci-libs/nipype/nipype-0.12.1.ebuild | 2 +-
sci-libs/nipype/nipype-9999.ebuild | 11 +++++++++++
3 files changed, 13 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild
index c9a783d..09912f6 100644
--- a/sci-libs/nipype/nipype-0.12.0.ebuild
+++ b/sci-libs/nipype/nipype-0.12.0.ebuild
@@ -24,7 +24,7 @@ DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]
test? ( dev-python/mock[${PYTHON_USEDEP}] )
- "
+ "
RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild
index c9a783d..09912f6 100644
--- a/sci-libs/nipype/nipype-0.12.1.ebuild
+++ b/sci-libs/nipype/nipype-0.12.1.ebuild
@@ -24,7 +24,7 @@ DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]
test? ( dev-python/mock[${PYTHON_USEDEP}] )
- "
+ "
RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index e9fed21..8a0480b 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -26,6 +26,7 @@ DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]
test? ( dev-python/mock[${PYTHON_USEDEP}] )
+ $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
"
RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
@@ -36,6 +37,16 @@ RDEPEND="
dev-python/simplejson[${PYTHON_USEDEP}]
"
+python_prepare_all() {
+ distutils-r1_python_prepare_all
+ EXISTING_REQUIRE="setup_requires=['future', 'configparser']"
+ CORRECTED_REQUIRE="setup_requires=['future']"
+ sed \
+ -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \
+ -i setup.py \
+ || die "sed setup.py"
+}
+
python_test() {
nosetests -v || die
}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2016-10-30 18:33 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2016-10-30 18:33 UTC (permalink / raw
To: gentoo-commits
commit: a195dca39386e7dcba0504b5a18a2b59db3c721b
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Sun Oct 30 18:33:00 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Oct 30 18:33:00 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a195dca3
sci-libs/nipype: fixed sed syntax (#698)
Package-Manager: portage-2.3.2
sci-libs/nipype/nipype-9999.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 8a0480b..af5332c 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -39,8 +39,8 @@ RDEPEND="
python_prepare_all() {
distutils-r1_python_prepare_all
- EXISTING_REQUIRE="setup_requires=['future', 'configparser']"
- CORRECTED_REQUIRE="setup_requires=['future']"
+ EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]"
+ CORRECTED_REQUIRE="setup_requires=\['future'\]"
sed \
-e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \
-i setup.py \
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2017-03-06 15:11 Marius Brehler
0 siblings, 0 replies; 50+ messages in thread
From: Marius Brehler @ 2017-03-06 15:11 UTC (permalink / raw
To: gentoo-commits
commit: 054fdad8b4be758ffcc75750c9f2ca91f98574ed
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Sun Mar 5 20:42:55 2017 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sun Mar 5 20:42:55 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=054fdad8
sci-libs/nipype: missing dependency (#742)
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-libs/nipype/nipype-9999.ebuild | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 650813beb..f1affdd81 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -23,11 +23,12 @@ DEPEND="
dev-python/prov[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
+ >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}]
test? ( dev-python/mock[${PYTHON_USEDEP}] )
$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
"
RDEPEND="
+ >=dev-python/click-6.6[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2017-04-22 16:10 Justin Lecher
0 siblings, 0 replies; 50+ messages in thread
From: Justin Lecher @ 2017-04-22 16:10 UTC (permalink / raw
To: gentoo-commits
commit: 10e4074b8e5d88f7c0f78d98872c0c5e269b19b4
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Sat Apr 22 16:08:09 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Apr 22 16:08:09 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=10e4074b
sci-libs/nipype: updted dependencies (#776)
upstream (as of now) still insists that pytest should be available at runtime
and explicitly checks
Package-Manager: Portage-2.3.5, Repoman-2.3.2
sci-libs/nipype/nipype-9999.ebuild | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index f1affdd81..a58d9d220 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -24,7 +24,10 @@ DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
>=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}]
- test? ( dev-python/mock[${PYTHON_USEDEP}] )
+ test? (
+ dev-python/mock[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ )
$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
"
RDEPEND="
@@ -32,7 +35,8 @@ RDEPEND="
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ >=dev-python/traits-4.6.0[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
dev-python/simplejson[${PYTHON_USEDEP}]
"
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2017-08-25 4:04 Benda XU
0 siblings, 0 replies; 50+ messages in thread
From: Benda XU @ 2017-08-25 4:04 UTC (permalink / raw
To: gentoo-commits
commit: 0a19ef7a59ffe05e7145b01550971d225dad748e
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Mon Aug 7 09:04:55 2017 +0000
Commit: Benda XU <heroxbd <AT> gentoo <DOT> org>
CommitDate: Fri Aug 25 04:03:45 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0a19ef7a
sci-libs/nipype: added dependencies
Package-Manager: Portage-2.3.6, Repoman-2.3.3
sci-libs/nipype/nipype-9999.ebuild | 3 +++
1 file changed, 3 insertions(+)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index a58d9d220..d1de488c9 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -32,10 +32,13 @@ DEPEND="
"
RDEPEND="
>=dev-python/click-6.6[${PYTHON_USEDEP}]
+ dev-python/funcsigs[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]
dev-python/pytest[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
>=dev-python/traits-4.6.0[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
dev-python/simplejson[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2018-06-26 0:50 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2018-06-26 0:50 UTC (permalink / raw
To: gentoo-commits
commit: 2afd2fbdee20a8b42f5fc9bdc7d696774e567650
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Jun 26 00:50:14 2018 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jun 26 00:50:14 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2afd2fbd
sci-libs/nipype: version bump
Package-Manager: Portage-2.3.40, Repoman-2.3.9
sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild | 62 ++++++++++++++++++++++++
1 file changed, 62 insertions(+)
diff --git a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild
new file mode 100644
index 000000000..0fc65a5ce
--- /dev/null
+++ b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild
@@ -0,0 +1,62 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+COMMIT="7055313c91de52bf65518284b42df446466fe581"
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${COMMIT}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+ dev-python/future[${PYTHON_USEDEP}]
+ =dev-python/prov-1.5.0[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}]
+ test? (
+ dev-python/mock[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ )
+ $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
+ "
+RDEPEND="
+ >=dev-python/click-6.6[${PYTHON_USEDEP}]
+ dev-python/funcsigs[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
+ dev-python/pydotplus[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ >=dev-python/traits-4.6.0[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/simplejson[${PYTHON_USEDEP}]
+ "
+
+S="${WORKDIR}/${PN}-${COMMIT}"
+
+python_prepare_all() {
+ distutils-r1_python_prepare_all
+ EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]"
+ CORRECTED_REQUIRE="setup_requires=\['future'\]"
+ sed \
+ -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \
+ -i setup.py \
+ || die "sed setup.py"
+}
+
+python_test() {
+ nosetests -v || die
+}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2018-08-09 15:37 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2018-08-09 15:37 UTC (permalink / raw
To: gentoo-commits
commit: 9ff9b8b3e82229189dffb17c17b394a701e38498
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Thu Aug 9 15:37:19 2018 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Aug 9 15:37:19 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9ff9b8b3
sci-libs/nipype: EAPI and PYTHON_COMPAT bump
Package-Manager: Portage-2.3.44, Repoman-2.3.10
sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild
index 0fc65a5ce..ce6a52d9b 100644
--- a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild
+++ b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild
@@ -1,9 +1,9 @@
# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
@@ -21,7 +21,7 @@ IUSE="test"
DEPEND="
dev-python/future[${PYTHON_USEDEP}]
- =dev-python/prov-1.5.0[${PYTHON_USEDEP}]
+ ~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
>=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2018-08-09 15:46 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2018-08-09 15:46 UTC (permalink / raw
To: gentoo-commits
commit: 5e2ddabad787cef77cf2197110355953c92aed5e
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Thu Aug 9 15:45:45 2018 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Aug 9 15:45:45 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5e2ddaba
sci-libs/nipype: version bump
Package-Manager: Portage-2.3.44, Repoman-2.3.10
sci-libs/nipype/nipype-1.1.0.ebuild | 53 +++++++++++++++++++++++++++++++++++++
1 file changed, 53 insertions(+)
diff --git a/sci-libs/nipype/nipype-1.1.0.ebuild b/sci-libs/nipype/nipype-1.1.0.ebuild
new file mode 100644
index 000000000..8c2713712
--- /dev/null
+++ b/sci-libs/nipype/nipype-1.1.0.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+ dev-python/future[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ ~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ test? (
+ dev-python/mock[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ ${RDEPEND}
+ )
+ $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
+ "
+RDEPEND="
+ >=dev-python/click-6.6[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
+ dev-python/pydotplus[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ dev-python/simplejson[${PYTHON_USEDEP}]
+ dev-python/traits[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ virtual/python-funcsigs[${PYTHON_USEDEP}]
+ "
+
+python_test() {
+ py.test -v --cov nipype\
+ --cov-config .coveragerc\
+ --cov-report xml:cov.xml\
+ -c nipype/pytest.ini\
+ --doctest-modules nipype\
+ || die
+}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2018-08-10 1:47 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2018-08-10 1:47 UTC (permalink / raw
To: gentoo-commits
commit: 81bed4e668e2ee6425cc555524189ceb2198a04f
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Fri Aug 10 01:47:24 2018 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Aug 10 01:47:24 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=81bed4e6
sci-libs/nipype: version bump
Package-Manager: Portage-2.3.45, Repoman-2.3.10
sci-libs/nipype/nipype-1.1.1.ebuild | 53 +++++++++++++++++++++++++++++++++++++
1 file changed, 53 insertions(+)
diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1.ebuild
new file mode 100644
index 000000000..8c2713712
--- /dev/null
+++ b/sci-libs/nipype/nipype-1.1.1.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+ dev-python/future[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ ~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ test? (
+ dev-python/mock[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ ${RDEPEND}
+ )
+ $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
+ "
+RDEPEND="
+ >=dev-python/click-6.6[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
+ dev-python/pydotplus[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ dev-python/simplejson[${PYTHON_USEDEP}]
+ dev-python/traits[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ virtual/python-funcsigs[${PYTHON_USEDEP}]
+ "
+
+python_test() {
+ py.test -v --cov nipype\
+ --cov-config .coveragerc\
+ --cov-report xml:cov.xml\
+ -c nipype/pytest.ini\
+ --doctest-modules nipype\
+ || die
+}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2018-08-10 22:07 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2018-08-10 22:07 UTC (permalink / raw
To: gentoo-commits
commit: 2348b81704f52c52934c2c92a16e5f47b579f0e8
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Fri Aug 10 22:07:40 2018 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Aug 10 22:07:40 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2348b817
sci-libs/nipype: added testing dep
Package-Manager: Portage-2.3.45, Repoman-2.3.10
sci-libs/nipype/nipype-1.1.0.ebuild | 1 +
sci-libs/nipype/nipype-1.1.1.ebuild | 1 +
sci-libs/nipype/nipype-9999.ebuild | 3 ++-
3 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-libs/nipype/nipype-1.1.0.ebuild b/sci-libs/nipype/nipype-1.1.0.ebuild
index 8c2713712..84e7e852b 100644
--- a/sci-libs/nipype/nipype-1.1.0.ebuild
+++ b/sci-libs/nipype/nipype-1.1.0.ebuild
@@ -26,6 +26,7 @@ DEPEND="
test? (
dev-python/mock[${PYTHON_USEDEP}]
dev-python/pytest[${PYTHON_USEDEP}]
+ dev-python/pytest-xdist[${PYTHON_USEDEP}]
${RDEPEND}
)
$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1.ebuild
index 8c2713712..84e7e852b 100644
--- a/sci-libs/nipype/nipype-1.1.1.ebuild
+++ b/sci-libs/nipype/nipype-1.1.1.ebuild
@@ -26,6 +26,7 @@ DEPEND="
test? (
dev-python/mock[${PYTHON_USEDEP}]
dev-python/pytest[${PYTHON_USEDEP}]
+ dev-python/pytest-xdist[${PYTHON_USEDEP}]
${RDEPEND}
)
$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index d1de488c9..30c5a6493 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -27,6 +27,7 @@ DEPEND="
test? (
dev-python/mock[${PYTHON_USEDEP}]
dev-python/pytest[${PYTHON_USEDEP}]
+ dev-python/pytest-xdist[${PYTHON_USEDEP}]
)
$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
"
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2018-09-26 17:31 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2018-09-26 17:31 UTC (permalink / raw
To: gentoo-commits
commit: a1b038cf90a79a134f78f6cc1f3b93ed698bd22f
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Wed Sep 26 17:30:49 2018 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed Sep 26 17:30:49 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a1b038cf
sci-libs/nipype: corrected dep
Package-Manager: Portage-2.3.49, Repoman-2.3.10
sci-libs/nipype/nipype-1.1.1.ebuild | 1 +
1 file changed, 1 insertion(+)
diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1.ebuild
index 84e7e852b..8233d90b8 100644
--- a/sci-libs/nipype/nipype-1.1.1.ebuild
+++ b/sci-libs/nipype/nipype-1.1.1.ebuild
@@ -35,6 +35,7 @@ RDEPEND="
>=dev-python/click-6.6[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/packaging[${PYTHON_USEDEP}]
+ dev-python/pydot[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]
dev-python/python-dateutil[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2019-01-15 21:40 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2019-01-15 21:40 UTC (permalink / raw
To: gentoo-commits
commit: 69df78d87cd1afe2ea49875e2b415b2461fcca1c
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Jan 15 21:40:06 2019 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 15 21:40:26 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=69df78d8
sci-libs/nipype: Deprecated version
Package-Manager: Portage-2.3.55, Repoman-2.3.12
Signed-off-by: Horea Christian <horea.christ <AT> yandex.com>
sci-libs/nipype/nipype-0.11.0.ebuild | 34 ----------------------------------
1 file changed, 34 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild
deleted file mode 100644
index fc3e7c1fc..000000000
--- a/sci-libs/nipype/nipype-0.11.0.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND="
- dev-python/future[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]"
-RDEPEND="
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]"
-
-python_test() {
- nosetests -v || die
-}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2019-01-15 21:43 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2019-01-15 21:43 UTC (permalink / raw
To: gentoo-commits
commit: 3ca9ada8d29959fbd498f409fb2590b601cfe0db
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Jan 15 21:41:45 2019 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 15 21:43:21 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3ca9ada8
sci-libs/nipype: added python_2* dependency
Package-Manager: Portage-2.3.55, Repoman-2.3.12
Signed-off-by: Horea Christian <horea.christ <AT> yandex.com>
sci-libs/nipype/nipype-1.1.1.ebuild | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1.ebuild
index 8233d90b8..70a0c37aa 100644
--- a/sci-libs/nipype/nipype-1.1.1.ebuild
+++ b/sci-libs/nipype/nipype-1.1.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -29,7 +29,9 @@ DEPEND="
dev-python/pytest-xdist[${PYTHON_USEDEP}]
${RDEPEND}
)
- $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
+ $(python_gen_cond_dep '
+ dev-python/futures[${PYTHON_USEDEP}]
+ dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
"
RDEPEND="
>=dev-python/click-6.6[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2019-01-15 21:53 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2019-01-15 21:53 UTC (permalink / raw
To: gentoo-commits
commit: 652a29d0e2b7fb59f5f87d535f65534ae59af01e
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Jan 15 21:52:56 2019 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 15 21:52:56 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=652a29d0
sci-libs/nipype: Updated license, copyright, EAPI
tests, and PYTHON_COMPAT
Package-Manager: Portage-2.3.55, Repoman-2.3.12
Signed-off-by: Horea Christian <horea.christ <AT> yandex.com>
sci-libs/nipype/nipype-9999.ebuild | 44 ++++++++++++++++++--------------------
1 file changed, 21 insertions(+), 23 deletions(-)
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index 30c5a6493..df9829dbd 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1 git-r3
@@ -13,48 +13,46 @@ HOMEPAGE="http://nipy.sourceforge.net/nipype/"
SRC_URI=""
EGIT_REPO_URI="https://github.com/nipy/nipype"
-LICENSE="BSD"
+LICENSE="Apache-2.0"
SLOT="0"
KEYWORDS=""
IUSE="test"
DEPEND="
dev-python/future[${PYTHON_USEDEP}]
- dev-python/prov[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
+ ~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
- >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]
test? (
dev-python/mock[${PYTHON_USEDEP}]
dev-python/pytest[${PYTHON_USEDEP}]
dev-python/pytest-xdist[${PYTHON_USEDEP}]
- )
- $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
+ ${RDEPEND}
+ )
+ $(python_gen_cond_dep '
+ dev-python/futures[${PYTHON_USEDEP}]
+ dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
"
RDEPEND="
>=dev-python/click-6.6[${PYTHON_USEDEP}]
- dev-python/funcsigs[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/packaging[${PYTHON_USEDEP}]
+ dev-python/pydot[${PYTHON_USEDEP}]
dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
dev-python/python-dateutil[${PYTHON_USEDEP}]
- >=dev-python/traits-4.6.0[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
dev-python/simplejson[${PYTHON_USEDEP}]
+ dev-python/traits[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ virtual/python-funcsigs[${PYTHON_USEDEP}]
"
-python_prepare_all() {
- distutils-r1_python_prepare_all
- EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]"
- CORRECTED_REQUIRE="setup_requires=\['future'\]"
- sed \
- -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \
- -i setup.py \
- || die "sed setup.py"
-}
-
python_test() {
- nosetests -v || die
+ py.test -v --cov nipype\
+ --cov-config .coveragerc\
+ --cov-report xml:cov.xml\
+ -c nipype/pytest.ini\
+ --doctest-modules nipype\
+ || die
}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2019-05-01 16:36 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2019-05-01 16:36 UTC (permalink / raw
To: gentoo-commits
commit: 8faafb557dc5d48fd31e8c09d648be4e188ec2bd
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Wed May 1 16:36:41 2019 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed May 1 16:36:41 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8faafb55
sci-libs/nipype: revision for testing imports
Package-Manager: Portage-2.3.66, Repoman-2.3.12
Signed-off-by: Horea Christian <horea.christ <AT> yandex.com>
sci-libs/nipype/{nipype-1.1.1.ebuild => nipype-1.1.1-r1.ebuild} | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1-r1.ebuild
similarity index 91%
rename from sci-libs/nipype/nipype-1.1.1.ebuild
rename to sci-libs/nipype/nipype-1.1.1-r1.ebuild
index 70a0c37aa..e564b43c6 100644
--- a/sci-libs/nipype/nipype-1.1.1.ebuild
+++ b/sci-libs/nipype/nipype-1.1.1-r1.ebuild
@@ -47,6 +47,14 @@ RDEPEND="
virtual/python-funcsigs[${PYTHON_USEDEP}]
"
+src_prepare() {
+ sed -i\
+ -e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\
+ -e "/'pytest-xdist',$/d"\
+ nipype/info.py || die
+ default
+}
+
python_test() {
py.test -v --cov nipype\
--cov-config .coveragerc\
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2020-01-07 21:47 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2020-01-07 21:47 UTC (permalink / raw
To: gentoo-commits
commit: 673d45cd51db11a16d243a60efd84d9b34055219
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jan 7 21:47:07 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 7 21:47:07 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=673d45cd
sci-libs/nipype: deprecated old versions and PYTHON_COMPAT
Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-0.12.0.ebuild | 38 ---------------
sci-libs/nipype/nipype-0.12.1.ebuild | 38 ---------------
sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild | 62 ------------------------
sci-libs/nipype/nipype-1.1.0.ebuild | 4 +-
sci-libs/nipype/nipype-1.1.1-r1.ebuild | 4 +-
sci-libs/nipype/nipype-9999.ebuild | 4 +-
6 files changed, 6 insertions(+), 144 deletions(-)
diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild
deleted file mode 100644
index 3b1397b0f..000000000
--- a/sci-libs/nipype/nipype-0.12.0.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="test"
-
-DEPEND="
- dev-python/future[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- test? ( dev-python/mock[${PYTHON_USEDEP}] )
- "
-RDEPEND="
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
- dev-python/simplejson[${PYTHON_USEDEP}]
- "
-
-python_test() {
- nosetests -v || die
-}
diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild
deleted file mode 100644
index 3b1397b0f..000000000
--- a/sci-libs/nipype/nipype-0.12.1.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="test"
-
-DEPEND="
- dev-python/future[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- test? ( dev-python/mock[${PYTHON_USEDEP}] )
- "
-RDEPEND="
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
- dev-python/simplejson[${PYTHON_USEDEP}]
- "
-
-python_test() {
- nosetests -v || die
-}
diff --git a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild
deleted file mode 100644
index ce6a52d9b..000000000
--- a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild
+++ /dev/null
@@ -1,62 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-COMMIT="7055313c91de52bf65518284b42df446466fe581"
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${COMMIT}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-
-DEPEND="
- dev-python/future[${PYTHON_USEDEP}]
- ~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}]
- test? (
- dev-python/mock[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- )
- $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
- "
-RDEPEND="
- >=dev-python/click-6.6[${PYTHON_USEDEP}]
- dev-python/funcsigs[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/packaging[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- >=dev-python/traits-4.6.0[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
- dev-python/simplejson[${PYTHON_USEDEP}]
- "
-
-S="${WORKDIR}/${PN}-${COMMIT}"
-
-python_prepare_all() {
- distutils-r1_python_prepare_all
- EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]"
- CORRECTED_REQUIRE="setup_requires=\['future'\]"
- sed \
- -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \
- -i setup.py \
- || die "sed setup.py"
-}
-
-python_test() {
- nosetests -v || die
-}
diff --git a/sci-libs/nipype/nipype-1.1.0.ebuild b/sci-libs/nipype/nipype-1.1.0.ebuild
index 84e7e852b..f7c871659 100644
--- a/sci-libs/nipype/nipype-1.1.0.ebuild
+++ b/sci-libs/nipype/nipype-1.1.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python{3_4,3_5,3_6} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-1.1.1-r1.ebuild b/sci-libs/nipype/nipype-1.1.1-r1.ebuild
index e564b43c6..959ce9a63 100644
--- a/sci-libs/nipype/nipype-1.1.1-r1.ebuild
+++ b/sci-libs/nipype/nipype-1.1.1-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python{3_4,3_5,3_6} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
index df9829dbd..dc35f3e2e 100644
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ b/sci-libs/nipype/nipype-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python{3_4,3_5,3_6} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1 git-r3
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2020-03-30 4:23 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2020-03-30 4:23 UTC (permalink / raw
To: gentoo-commits
commit: 4c04ec99ba702fcb718122050c008eaf5ad7fed3
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Mar 30 04:22:56 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Mar 30 04:22:56 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4c04ec99
sci-libs/nipype: PYTHON_COMPAT 3_7
Package-Manager: Portage-2.3.96, Repoman-2.3.22
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.1.0.ebuild | 54 -------------------------------
sci-libs/nipype/nipype-1.1.1-r1.ebuild | 30 +++++++++---------
sci-libs/nipype/nipype-9999.ebuild | 58 ----------------------------------
3 files changed, 15 insertions(+), 127 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.1.0.ebuild b/sci-libs/nipype/nipype-1.1.0.ebuild
deleted file mode 100644
index f7c871659..000000000
--- a/sci-libs/nipype/nipype-1.1.0.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python{3_4,3_5,3_6} )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-
-DEPEND="
- dev-python/future[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- ~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- test? (
- dev-python/mock[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- dev-python/pytest-xdist[${PYTHON_USEDEP}]
- ${RDEPEND}
- )
- $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
- "
-RDEPEND="
- >=dev-python/click-6.6[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/packaging[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- dev-python/simplejson[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
- virtual/python-funcsigs[${PYTHON_USEDEP}]
- "
-
-python_test() {
- py.test -v --cov nipype\
- --cov-config .coveragerc\
- --cov-report xml:cov.xml\
- -c nipype/pytest.ini\
- --doctest-modules nipype\
- || die
-}
diff --git a/sci-libs/nipype/nipype-1.1.1-r1.ebuild b/sci-libs/nipype/nipype-1.1.1-r1.ebuild
index 959ce9a63..1baca8aa8 100644
--- a/sci-libs/nipype/nipype-1.1.1-r1.ebuild
+++ b/sci-libs/nipype/nipype-1.1.1-r1.ebuild
@@ -3,7 +3,7 @@
EAPI=7
-PYTHON_COMPAT=( python{3_4,3_5,3_6} )
+PYTHON_COMPAT=( python3_{6,7} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
@@ -20,19 +20,18 @@ IUSE="test"
DEPEND="
dev-python/future[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
- ~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
+ dev-python/prov[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]
test? (
dev-python/mock[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- dev-python/pytest-xdist[${PYTHON_USEDEP}]
+ <=dev-python/pytest-4.6.9[${PYTHON_USEDEP}]
${RDEPEND}
)
- $(python_gen_cond_dep '
- dev-python/futures[${PYTHON_USEDEP}]
- dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
- "
+"
+# Dependency disabled as upstream test configuration which requires it fails
+#dev-python/pytest-xdist[${PYTHON_USEDEP}]
+
RDEPEND="
>=dev-python/click-6.6[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
@@ -44,8 +43,7 @@ RDEPEND="
dev-python/simplejson[${PYTHON_USEDEP}]
dev-python/traits[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
- virtual/python-funcsigs[${PYTHON_USEDEP}]
- "
+"
src_prepare() {
sed -i\
@@ -56,10 +54,12 @@ src_prepare() {
}
python_test() {
- py.test -v --cov nipype\
- --cov-config .coveragerc\
- --cov-report xml:cov.xml\
- -c nipype/pytest.ini\
- --doctest-modules nipype\
+ pytest -vv\
|| die
+ # Upstream test configuration fails
+ #-c nipype/pytest.ini\
+ #--doctest-modules nipype\
+ #--cov nipype\
+ #--cov-config .coveragerc\
+ #--cov-report xml:cov.xml\
}
diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild
deleted file mode 100644
index dc35f3e2e..000000000
--- a/sci-libs/nipype/nipype-9999.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python{3_4,3_5,3_6} )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1 git-r3
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/nipy/nipype"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS=""
-IUSE="test"
-
-DEPEND="
- dev-python/future[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- ~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- test? (
- dev-python/mock[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- dev-python/pytest-xdist[${PYTHON_USEDEP}]
- ${RDEPEND}
- )
- $(python_gen_cond_dep '
- dev-python/futures[${PYTHON_USEDEP}]
- dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
- "
-RDEPEND="
- >=dev-python/click-6.6[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/packaging[${PYTHON_USEDEP}]
- dev-python/pydot[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- dev-python/simplejson[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
- virtual/python-funcsigs[${PYTHON_USEDEP}]
- "
-
-python_test() {
- py.test -v --cov nipype\
- --cov-config .coveragerc\
- --cov-report xml:cov.xml\
- -c nipype/pytest.ini\
- --doctest-modules nipype\
- || die
-}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2020-04-12 7:57 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2020-04-12 7:57 UTC (permalink / raw
To: gentoo-commits
commit: bc44451d56ba7f057b2a476d23ebb6b32730c8ca
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Apr 12 07:57:22 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Apr 12 07:57:22 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bc44451d
sci-libs/nipype: revbump 1.1.1-r2
package supports newer prov
Package-Manager: Portage-2.3.98, Repoman-2.3.22
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.1.1-r2.ebuild | 69 ++++++++++++++++++++++++++++++++++
1 file changed, 69 insertions(+)
diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
new file mode 100644
index 000000000..a83371092
--- /dev/null
+++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+ dev-python/future[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/prov[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ test? (
+ dev-python/mock[${PYTHON_USEDEP}]
+ <=dev-python/pytest-4.6.9[${PYTHON_USEDEP}]
+ ${RDEPEND}
+ )
+"
+# Dependency disabled as upstream test configuration which requires it fails
+#dev-python/pytest-xdist[${PYTHON_USEDEP}]
+
+RDEPEND="
+ >=dev-python/click-6.6[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
+ dev-python/pydot[${PYTHON_USEDEP}]
+ dev-python/pydotplus[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ dev-python/simplejson[${PYTHON_USEDEP}]
+ dev-python/traits[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+"
+
+src_prepare() {
+ sed -i\
+ -e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\
+ -e "/'pytest-xdist',$/d"\
+ -e "/'prov==%s' % PROV_VERSION,/d"\
+ nipype/info.py || die
+ sed -i\
+ -e "s/prov==1\.5\.0/prov/g"\
+ requirements.txt rtd_requirements.txt || die
+ default
+}
+
+python_test() {
+ pytest -vv\
+ || die
+ # Upstream test configuration fails
+ #-c nipype/pytest.ini\
+ #--doctest-modules nipype\
+ #--cov nipype\
+ #--cov-config .coveragerc\
+ #--cov-report xml:cov.xml\
+}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2020-09-27 22:08 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2020-09-27 22:08 UTC (permalink / raw
To: gentoo-commits
commit: ec60cab9e5588cc9146e57bda2e47de1a0899121
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 22:08:19 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 22:08:19 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ec60cab9
sci-libs/nipype: PYTHON_COMPAT update
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.1.1-r2.ebuild | 2 +-
sci-libs/nipype/nipype-1.4.2.ebuild | 2 +-
sci-libs/nipype/nipype-1.5.0.ebuild | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
index 528967695..d8522c62f 100644
--- a/sci-libs/nipype/nipype-1.1.1-r2.ebuild
+++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
@@ -3,7 +3,7 @@
EAPI=7
-PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_COMPAT=( python3_7 )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-1.4.2.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild
index dd1b5e1f0..a5b417283 100644
--- a/sci-libs/nipype/nipype-1.4.2.ebuild
+++ b/sci-libs/nipype/nipype-1.4.2.ebuild
@@ -3,7 +3,7 @@
EAPI=7
-PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_COMPAT=( python3_7 )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index 1c3357c1a..ab80fb93b 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -3,7 +3,7 @@
EAPI=7
-PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_COMPAT=( python3_7 )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2020-12-23 8:06 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2020-12-23 8:06 UTC (permalink / raw
To: gentoo-commits
commit: f0eddb25f3291918b16fdfb6336a32cd92d7c0a3
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Wed Dec 23 08:06:51 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed Dec 23 08:06:51 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f0eddb25
sci-libs/nipype: updated PYTHON_COMPAT
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.5.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index ab80fb93b..164116792 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -3,7 +3,7 @@
EAPI=7
-PYTHON_COMPAT=( python3_7 )
+PYTHON_COMPAT=( python3_{7..8} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2020-12-24 11:06 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2020-12-24 11:06 UTC (permalink / raw
To: gentoo-commits
commit: eb5422aaa068d3c968908b43a8063de35bd43587
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Dec 24 11:03:57 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Dec 24 11:03:57 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=eb5422aa
sci-libs/nipype: conditional test restriction
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.1.1-r2.ebuild | 1 +
sci-libs/nipype/nipype-1.4.2.ebuild | 1 +
sci-libs/nipype/nipype-1.5.0.ebuild | 1 +
3 files changed, 3 insertions(+)
diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
index d8522c62f..734fae8fc 100644
--- a/sci-libs/nipype/nipype-1.1.1-r2.ebuild
+++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
@@ -16,6 +16,7 @@ LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="test"
+RESTRICT="!test? ( test )"
DEPEND="
dev-python/future[${PYTHON_USEDEP}]
diff --git a/sci-libs/nipype/nipype-1.4.2.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild
index a5b417283..1f91463b6 100644
--- a/sci-libs/nipype/nipype-1.4.2.ebuild
+++ b/sci-libs/nipype/nipype-1.4.2.ebuild
@@ -16,6 +16,7 @@ LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="test"
+RESTRICT="!test? ( test )"
DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index 164116792..87975149e 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -16,6 +16,7 @@ LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="test"
+RESTRICT="!test? ( test )"
DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2021-01-20 9:40 Andrew Ammerlaan
0 siblings, 0 replies; 50+ messages in thread
From: Andrew Ammerlaan @ 2021-01-20 9:40 UTC (permalink / raw
To: gentoo-commits
commit: 2497d3d59d9e67dcc67eb8687964e57d18b6993c
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Jan 20 09:40:39 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Jan 20 09:40:39 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2497d3d5
sci-libs/nipype: drop old failed REQUIRED_USE: py_targets_py3_7
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-libs/nipype/nipype-1.1.1-r2.ebuild | 70 ----------------------------------
sci-libs/nipype/nipype-1.4.2.ebuild | 67 --------------------------------
2 files changed, 137 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
deleted file mode 100644
index 734fae8fc..000000000
--- a/sci-libs/nipype/nipype-1.1.1-r2.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_7 )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
- dev-python/future[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/prov[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- test? (
- dev-python/mock[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- ${RDEPEND}
- )
-"
-# Dependency disabled as upstream test configuration which requires it fails
-#dev-python/pytest-xdist[${PYTHON_USEDEP}]
-
-RDEPEND="
- >=dev-python/click-6.6[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/packaging[${PYTHON_USEDEP}]
- dev-python/pydot[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- dev-python/simplejson[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
-"
-
-src_prepare() {
- sed -i\
- -e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\
- -e "/'pytest-xdist',$/d"\
- -e "/'prov==%s' % PROV_VERSION,/d"\
- nipype/info.py || die
- sed -i\
- -e "s/prov==1\.5\.0/prov/g"\
- requirements.txt rtd_requirements.txt || die
- default
-}
-
-python_test() {
- pytest -vv\
- || die
- # Upstream test configuration fails
- #-c nipype/pytest.ini\
- #--doctest-modules nipype\
- #--cov nipype\
- #--cov-config .coveragerc\
- #--cov-report xml:cov.xml\
-}
diff --git a/sci-libs/nipype/nipype-1.4.2.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild
deleted file mode 100644
index 1f91463b6..000000000
--- a/sci-libs/nipype/nipype-1.4.2.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_7 )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/prov[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- test? (
- dev-python/mock[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- ${RDEPEND}
- )
-"
-# Dependency disabled as upstream test configuration which requires it fails
-#dev-python/pytest-xdist[${PYTHON_USEDEP}]
-
-RDEPEND="
- >=dev-python/click-6.6[${PYTHON_USEDEP}]
- dev-python/filelock[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/packaging[${PYTHON_USEDEP}]
- dev-python/pydot[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- dev-python/simplejson[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
-"
-#etelemetry and neurdflib
-
-src_prepare() {
- sed -i \
- -e "/def test_no_et(tmp_path):/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-606003186')" \
- nipype/tests/test_nipype.py || die
- sed -i \
- -e "/def test_fslversion():/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-605997462')" \
- nipype/interfaces/fsl/tests/test_base.py || die
- default
-}
-
-python_test() {
- NIPYPE_NO_ET=1 pytest -vv\
- || die
- # Upstream test configuration fails
- #-c nipype/pytest.ini\
- #--doctest-modules nipype\
- #--cov nipype\
- #--cov-config .coveragerc\
- #--cov-report xml:cov.xml\
-}
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2021-07-30 18:26 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2021-07-30 18:26 UTC (permalink / raw
To: gentoo-commits
commit: ad210701a5f482395b08d16aa2dd3760b264d9c8
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Jul 30 18:26:27 2021 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Jul 30 18:26:27 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ad210701
sci-libs/nipype: PYTHON_COMPAT update
Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.5.0.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index 87975149e..35792adbc 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
-PYTHON_COMPAT=( python3_{7..8} )
+PYTHON_COMPAT=( python3_{7..9} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2022-07-12 18:19 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2022-07-12 18:19 UTC (permalink / raw
To: gentoo-commits
commit: d6fa4af73b3f624160410f0876d36280e541ac0e
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jul 12 18:19:45 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jul 12 18:19:45 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d6fa4af7
sci-libs/nipype: removed superfluous die call
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.5.0.ebuild | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index 67e244049..58849547e 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -80,8 +80,7 @@ EPYTEST_DESELECT=(
python_test() {
# Setting environment variable to disable etelemetry version check:
# https://github.com/nipy/nipype/issues/3196#issuecomment-605980044
- NIPYPE_NO_ET=1 epytest -vv\
- || die
+ NIPYPE_NO_ET=1 epytest -vv
# Upstream test configuration fails
#-c nipype/pytest.ini\
#--doctest-modules nipype\
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2022-07-13 2:54 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2022-07-13 2:54 UTC (permalink / raw
To: gentoo-commits
commit: d05511bdde6d75507e3d7dbc7d6ac1030187832d
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Wed Jul 13 02:54:39 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed Jul 13 02:54:39 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d05511bd
sci-libs/nipype: removed superfluous pytest arguments
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.5.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index 58849547e..757ff5cdb 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -80,7 +80,7 @@ EPYTEST_DESELECT=(
python_test() {
# Setting environment variable to disable etelemetry version check:
# https://github.com/nipy/nipype/issues/3196#issuecomment-605980044
- NIPYPE_NO_ET=1 epytest -vv
+ NIPYPE_NO_ET=1 epytest
# Upstream test configuration fails
#-c nipype/pytest.ini\
#--doctest-modules nipype\
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2022-08-09 7:23 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2022-08-09 7:23 UTC (permalink / raw
To: gentoo-commits
commit: 95178af611b210508c270926a62a25b1bd21733e
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Aug 9 07:22:18 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Aug 9 07:22:18 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=95178af6
sci-libs/nipype: purged dangling etelemetry requirement
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.5.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index 757ff5cdb..f2a0815dc 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -52,7 +52,7 @@ PATCHES=(
src_prepare() {
# Remove etelemetry
- sed -i '/"etelemetry/d' nipype/info.py || die
+ sed -i '/"etelemetry/d' nipype/info.py requirements.txt || die
# Mark failing tests
sed -i \
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2023-02-16 8:30 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2023-02-16 8:30 UTC (permalink / raw
To: gentoo-commits
commit: ef43395ed6f8329c744a2fa55bba10f3637cd259
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Feb 16 08:30:38 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Feb 16 08:30:38 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ef43395e
sci-libs/nipype: updated HOMEPAGE
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.5.0.ebuild | 2 +-
sci-libs/nipype/nipype-1.8.4.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index abf8c0aa8..b590f1095 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -9,7 +9,7 @@ PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+HOMEPAGE="https://nipype.readthedocs.io/"
SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
diff --git a/sci-libs/nipype/nipype-1.8.4.ebuild b/sci-libs/nipype/nipype-1.8.4.ebuild
index e1172c4c5..2bb45c676 100644
--- a/sci-libs/nipype/nipype-1.8.4.ebuild
+++ b/sci-libs/nipype/nipype-1.8.4.ebuild
@@ -9,7 +9,7 @@ PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+HOMEPAGE="https://nipype.readthedocs.io/"
SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2023-04-06 18:48 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2023-04-06 18:48 UTC (permalink / raw
To: gentoo-commits
commit: 1c2d9c184a6d79f1308b5b2ce3b39bca76a8fce9
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Apr 6 18:48:08 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Apr 6 18:48:08 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1c2d9c18
sci-libs/nipype: dependency update
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/{nipype-1.8.4.ebuild => nipype-1.8.4-r1.ebuild} | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.8.4.ebuild b/sci-libs/nipype/nipype-1.8.4-r1.ebuild
similarity index 97%
rename from sci-libs/nipype/nipype-1.8.4.ebuild
rename to sci-libs/nipype/nipype-1.8.4-r1.ebuild
index 2bb45c676..d70509ce1 100644
--- a/sci-libs/nipype/nipype-1.8.4.ebuild
+++ b/sci-libs/nipype/nipype-1.8.4-r1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64"
IUSE="test"
RESTRICT="!test? ( test )"
@@ -31,12 +31,13 @@ DEPEND="
RDEPEND="
dev-python/click[${PYTHON_USEDEP}]
- dev-python/rdflib[${PYTHON_USEDEP}]
dev-python/filelock[${PYTHON_USEDEP}]
+ dev-python/looseversion[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/packaging[${PYTHON_USEDEP}]
dev-python/pydot[${PYTHON_USEDEP}]
dev-python/python-dateutil[${PYTHON_USEDEP}]
+ dev-python/rdflib[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/simplejson[${PYTHON_USEDEP}]
<dev-python/traits-6.4.0[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2023-05-02 23:58 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2023-05-02 23:58 UTC (permalink / raw
To: gentoo-commits
commit: 9c8ae0f75d601b13d193cb0bfd7422498fb38f74
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue May 2 23:54:32 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue May 2 23:54:32 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9c8ae0f7
sci-libs/nipype: enable py3.11
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-libs/nipype/nipype-1.5.0.ebuild | 4 ++--
sci-libs/nipype/nipype-1.8.4-r1.ebuild | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild
index b590f1095..750c3ba05 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.5.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
-PYTHON_COMPAT=( python3_10 )
+PYTHON_COMPAT=( python3_{10..11} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
diff --git a/sci-libs/nipype/nipype-1.8.4-r1.ebuild b/sci-libs/nipype/nipype-1.8.4-r1.ebuild
index d70509ce1..8214ccff4 100644
--- a/sci-libs/nipype/nipype-1.8.4-r1.ebuild
+++ b/sci-libs/nipype/nipype-1.8.4-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
-PYTHON_COMPAT=( python3_10 )
+PYTHON_COMPAT=( python3_{10..11} )
PYTHON_REQ_USE="threads(+),sqlite"
inherit distutils-r1
^ permalink raw reply related [flat|nested] 50+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
@ 2024-01-22 14:42 Horea Christian
0 siblings, 0 replies; 50+ messages in thread
From: Horea Christian @ 2024-01-22 14:42 UTC (permalink / raw
To: gentoo-commits
commit: 1d9d9f6cbf7e933c4fed1f4ec4e3183b1ea0f76c
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Jan 22 14:39:15 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Jan 22 14:39:15 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1d9d9f6c
sci-libs/nipype: add 1.8.6, drop 1.5.0
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
.../{nipype-1.5.0.ebuild => nipype-1.8.6.ebuild} | 25 +++++++++++-----------
1 file changed, 12 insertions(+), 13 deletions(-)
diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.8.6.ebuild
similarity index 75%
rename from sci-libs/nipype/nipype-1.5.0.ebuild
rename to sci-libs/nipype/nipype-1.8.6.ebuild
index 750c3ba05..88bc23395 100644
--- a/sci-libs/nipype/nipype-1.5.0.ebuild
+++ b/sci-libs/nipype/nipype-1.8.6.ebuild
@@ -3,6 +3,7 @@
EAPI=8
+DISTUTILS_USE_PEP517=setuptools
PYTHON_COMPAT=( python3_{10..11} )
PYTHON_REQ_USE="threads(+),sqlite"
@@ -16,7 +17,9 @@ LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="test"
-RESTRICT="!test? ( test )"
+# Tests fail with numpy import error:
+# https://github.com/nipy/nipype/issues/3626
+RESTRICT="test"
DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
@@ -28,30 +31,28 @@ DEPEND="
${RDEPEND}
)
"
-# Dependency disabled as upstream test configuration which requires it fails
-#dev-python/pytest-xdist[${PYTHON_USEDEP}]
RDEPEND="
- >=dev-python/click-6.6[${PYTHON_USEDEP}]
+ dev-python/click[${PYTHON_USEDEP}]
dev-python/filelock[${PYTHON_USEDEP}]
+ dev-python/looseversion[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/packaging[${PYTHON_USEDEP}]
dev-python/pydot[${PYTHON_USEDEP}]
- dev-python/pydotplus[${PYTHON_USEDEP}]
dev-python/python-dateutil[${PYTHON_USEDEP}]
- >=dev-python/rdflib-5.0.0[${PYTHON_USEDEP}]
+ dev-python/rdflib[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/simplejson[${PYTHON_USEDEP}]
- dev-python/traits[${PYTHON_USEDEP}]
+ <dev-python/traits-6.4.0[${PYTHON_USEDEP}]
"
PATCHES=(
- "${FILESDIR}/${P}"-version_check.patch
- "${FILESDIR}/${P}"-collections.patch
+ "${FILESDIR}/${PN}-1.8.4-no_etelemetry.patch"
)
src_prepare() {
# Remove etelemetry
+ # Doing this separately since the file is affected by another patch.
sed -i '/"etelemetry/d' nipype/info.py requirements.txt || die
# Mark failing tests
@@ -69,12 +70,10 @@ python_install_all() {
doenvd "${FILESDIR}/98nipype"
}
+# Reported upstream:
+# https://github.com/nipy/nipype/issues/3540
EPYTEST_DESELECT=(
- nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_compcor
- nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_compcor_variance_threshold_and_metadata
- nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor
nipype/interfaces/tests/test_io.py::test_s3datagrabber_communication
- nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help
)
python_test() {
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