From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 793EB138CCE for ; Tue, 5 May 2015 15:12:25 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 1737CE086B; Tue, 5 May 2015 15:12:25 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 9E85CE086B for ; Tue, 5 May 2015 15:12:22 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E9D9C3407A3 for ; Tue, 5 May 2015 15:12:21 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id A645E98C for ; Tue, 5 May 2015 15:12:20 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1430838700.b01f66fab12d15b2ab19af9f8ca677924dbd6132.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/polyphen/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/polyphen/ChangeLog sci-biology/polyphen/metadata.xml sci-biology/polyphen/polyphen-2.2.2.ebuild X-VCS-Directories: sci-biology/polyphen/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: b01f66fab12d15b2ab19af9f8ca677924dbd6132 X-VCS-Branch: master Date: Tue, 5 May 2015 15:12:20 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: efd07061-b652-4f60-8309-64a0e1dfdce9 X-Archives-Hash: 2b570f22403c616fbe06cdb9e75d2f93 commit: b01f66fab12d15b2ab19af9f8ca677924dbd6132 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue May 5 15:11:40 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue May 5 15:11:40 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b01f66fa sci-biology/polyphen: package skeleton Package-Manager: portage-2.2.18 sci-biology/polyphen/ChangeLog | 9 +++++++++ sci-biology/polyphen/metadata.xml | 9 +++++++++ sci-biology/polyphen/polyphen-2.2.2.ebuild | 27 +++++++++++++++++++++++++++ 3 files changed, 45 insertions(+) diff --git a/sci-biology/polyphen/ChangeLog b/sci-biology/polyphen/ChangeLog new file mode 100644 index 0000000..da1810a --- /dev/null +++ b/sci-biology/polyphen/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/polyphen +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*polyphen-2.2.2 (05 May 2015) + + 05 May 2015; Martin Mokrejs +metadata.xml, + +polyphen-2.2.2.ebuild: + sci-biology/polyphen: package skeleton diff --git a/sci-biology/polyphen/metadata.xml b/sci-biology/polyphen/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/polyphen/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + diff --git a/sci-biology/polyphen/polyphen-2.2.2.ebuild b/sci-biology/polyphen/polyphen-2.2.2.ebuild new file mode 100644 index 0000000..3f602cf --- /dev/null +++ b/sci-biology/polyphen/polyphen-2.2.2.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Predict effect of aminoacid substitution on human protein function" +HOMEPAGE="http://genetics.bwh.harvard.edu/pph2/dokuwiki/start" +SRC_URI="http://genetics.bwh.harvard.edu/pph2/dokuwiki/_media/polyphen-2.2.2r405b.tar.gz" + +LICENSE="polyphen" # for non-commercial use only +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +# 3.7GB +# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-databases-2011_12.tar.bz2 + +# 2.4GB +# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-alignments-mlc-2011_12.tar.bz2 + +# 895MB +# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-alignments-multiz-2009_10.tar.bz2 +