[gentoo-commits] proj/sci:master commit in: sci-biology/polyphen/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     b01f66fab12d15b2ab19af9f8ca677924dbd6132
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue May  5 15:11:40 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue May  5 15:11:40 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b01f66fa

sci-biology/polyphen: package skeleton

Package-Manager: portage-2.2.18

 sci-biology/polyphen/ChangeLog             |  9 +++++++++
 sci-biology/polyphen/metadata.xml          |  9 +++++++++
 sci-biology/polyphen/polyphen-2.2.2.ebuild | 27 +++++++++++++++++++++++++++
 3 files changed, 45 insertions(+)

diff --git a/sci-biology/polyphen/ChangeLog b/sci-biology/polyphen/ChangeLog
new file mode 100644
index 0000000..da1810a
--- /dev/null
+++ b/sci-biology/polyphen/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/polyphen
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*polyphen-2.2.2 (05 May 2015)
+
+  05 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+  +polyphen-2.2.2.ebuild:
+  sci-biology/polyphen: package skeleton

diff --git a/sci-biology/polyphen/metadata.xml b/sci-biology/polyphen/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/polyphen/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/polyphen/polyphen-2.2.2.ebuild b/sci-biology/polyphen/polyphen-2.2.2.ebuild
new file mode 100644
index 0000000..3f602cf
--- /dev/null
+++ b/sci-biology/polyphen/polyphen-2.2.2.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Predict effect of aminoacid substitution on human protein function"
+HOMEPAGE="http://genetics.bwh.harvard.edu/pph2/dokuwiki/start"
+SRC_URI="http://genetics.bwh.harvard.edu/pph2/dokuwiki/_media/polyphen-2.2.2r405b.tar.gz"
+
+LICENSE="polyphen" # for non-commercial use only
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+# 3.7GB
+# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-databases-2011_12.tar.bz2
+
+# 2.4GB
+# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-alignments-mlc-2011_12.tar.bz2
+
+# 895MB
+# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-alignments-multiz-2009_10.tar.bz2
+