From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 0421E138CCE for ; Tue, 5 May 2015 15:10:56 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id F3CB6E0849; Tue, 5 May 2015 15:10:53 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 8A5BAE0849 for ; Tue, 5 May 2015 15:10:52 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 2C6E4340B03 for ; Tue, 5 May 2015 15:10:51 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 156F298C for ; Tue, 5 May 2015 15:10:49 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1430838602.2bd8167c9b0bea828111da63404724d0667cfbf3.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/barnacle/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/barnacle/ChangeLog sci-biology/barnacle/barnacle-1.0.3.ebuild sci-biology/barnacle/metadata.xml X-VCS-Directories: sci-biology/barnacle/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 2bd8167c9b0bea828111da63404724d0667cfbf3 X-VCS-Branch: master Date: Tue, 5 May 2015 15:10:49 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 4588a1c5-078c-4744-bfbf-e5a1824714d6 X-Archives-Hash: 18dba5247af9370f6d4a74856eeb7bf6 commit: 2bd8167c9b0bea828111da63404724d0667cfbf3 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue May 5 15:10:02 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue May 5 15:10:02 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2bd8167c sci-biology/barnacle: a skeleton of a messy package Package-Manager: portage-2.2.18 sci-biology/barnacle/ChangeLog | 9 +++++++ sci-biology/barnacle/barnacle-1.0.3.ebuild | 39 ++++++++++++++++++++++++++++++ sci-biology/barnacle/metadata.xml | 9 +++++++ 3 files changed, 57 insertions(+) diff --git a/sci-biology/barnacle/ChangeLog b/sci-biology/barnacle/ChangeLog new file mode 100644 index 0000000..7d5b981 --- /dev/null +++ b/sci-biology/barnacle/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/barnacle +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*barnacle-1.0.3 (05 May 2015) + + 05 May 2015; Martin Mokrejs + +barnacle-1.0.3.ebuild, +metadata.xml: + sci-biology/barnacle: a skeleton of a messy package diff --git a/sci-biology/barnacle/barnacle-1.0.3.ebuild b/sci-biology/barnacle/barnacle-1.0.3.ebuild new file mode 100644 index 0000000..de565f3 --- /dev/null +++ b/sci-biology/barnacle/barnacle-1.0.3.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Check de novo assembly for chimeric contigs/transcripts" +HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/barnacle" +#SRC_URI="http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/1.0.0/"${P}".tar.gz" +SRC_URI="http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/${PV}/${P}.tar.gz" +# ftp://ftp.bcgsc.ca/supplementary/Barnacle_BMC_Genomics/aml_data.tar.gz +# http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/1.0.3 + +LICENSE="bcca_2010" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${S}" + +# follow README.txt +src_compile(){ + cd src || die + # Run setup.py to compile the portions of Barnacle that require compilation, and download and setup the default annotations + ./setup.py || die +} + +src_install(){ + dodoc README.txt + cd src || die + # do something +} diff --git a/sci-biology/barnacle/metadata.xml b/sci-biology/barnacle/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/barnacle/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +