From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/prokka/
Date: Tue, 5 May 2015 14:49:04 +0000 (UTC) [thread overview]
Message-ID: <1430837297.3503dcaaadb870f97b2719158c2fcd384f7d9660.mmokrejs@gentoo> (raw)
commit: 3503dcaaadb870f97b2719158c2fcd384f7d9660
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue May 5 14:48:17 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue May 5 14:48:17 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3503dcaa
sci-biology/prokka: new package
Package-Manager: portage-2.2.18
sci-biology/prokka/ChangeLog | 9 +++++++++
sci-biology/prokka/metadata.xml | 9 +++++++++
sci-biology/prokka/prokka-1.11.ebuild | 31 +++++++++++++++++++++++++++++++
3 files changed, 49 insertions(+)
diff --git a/sci-biology/prokka/ChangeLog b/sci-biology/prokka/ChangeLog
new file mode 100644
index 0000000..4f5235a
--- /dev/null
+++ b/sci-biology/prokka/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/prokka
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*prokka-1.11 (05 May 2015)
+
+ 05 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +prokka-1.11.ebuild:
+ sci-biology/prokka: new package
diff --git a/sci-biology/prokka/metadata.xml b/sci-biology/prokka/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/prokka/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/prokka/prokka-1.11.ebuild b/sci-biology/prokka/prokka-1.11.ebuild
new file mode 100644
index 0000000..8fc53c5
--- /dev/null
+++ b/sci-biology/prokka/prokka-1.11.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Prokaryotic whole genome annotation pipeline"
+HOMEPAGE="http://www.bioinformatics.net.au/software.prokka.shtml"
+SRC_URI="http://www.vicbioinformatics.com/prokka-"${PV}".tar.gz"
+# 360MB
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ sys-process/parallel
+ sci-biology/bioperl
+ sci-biology/prodigal
+ sci-biology/ncbi-tools++
+ sci-biology/hmmer
+ sci-biology/infernal
+ sci-biology/exonerate
+ sci-biology/barrnap"
+# >=hmmer-3.1
+# Aragorn
+# RNAmmer
+# SignalP >= 4.0
+# sequin
next reply other threads:[~2015-05-05 14:49 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-05-05 14:49 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2015-05-05 14:53 [gentoo-commits] proj/sci:master commit in: sci-biology/prokka/ Martin Mokrejs
2015-05-26 9:48 Martin Mokrejs
2016-06-22 14:13 Martin Mokrejs
2023-05-02 12:27 Andrew Ammerlaan
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