From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 6175A138CCE for ; Tue, 5 May 2015 14:49:12 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id A9C74E082D; Tue, 5 May 2015 14:49:09 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 37197E082D for ; Tue, 5 May 2015 14:49:07 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 4808534087E for ; Tue, 5 May 2015 14:49:05 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 0788B98C for ; Tue, 5 May 2015 14:49:04 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1430836761.f60deed79963ffc7f97ea68afdfce84c891a2e58.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/exomiser-bin/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/exomiser-bin/ChangeLog sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild sci-biology/exomiser-bin/metadata.xml X-VCS-Directories: sci-biology/exomiser-bin/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: f60deed79963ffc7f97ea68afdfce84c891a2e58 X-VCS-Branch: master Date: Tue, 5 May 2015 14:49:04 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 38e5c6cf-fcbb-490c-a861-648687f29760 X-Archives-Hash: 5e0538a4c14e58cc8fc3ca37fb053f3d commit: f60deed79963ffc7f97ea68afdfce84c891a2e58 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue May 5 14:39:21 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue May 5 14:39:21 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f60deed7 sci-biology/exomiser-bin: new package Package-Manager: portage-2.2.18 sci-biology/exomiser-bin/ChangeLog | 9 +++++++++ sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild | 23 ++++++++++++++++++++++ sci-biology/exomiser-bin/metadata.xml | 9 +++++++++ 3 files changed, 41 insertions(+) diff --git a/sci-biology/exomiser-bin/ChangeLog b/sci-biology/exomiser-bin/ChangeLog new file mode 100644 index 0000000..0948caa --- /dev/null +++ b/sci-biology/exomiser-bin/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/exomiser-bin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*exomiser-bin-7.0.0 (05 May 2015) + + 05 May 2015; Martin Mokrejs + +exomiser-bin-7.0.0.ebuild, +metadata.xml: + sci-biology/exomiser-bin: new package diff --git a/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild b/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild new file mode 100644 index 0000000..875db0e --- /dev/null +++ b/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Annotate VCF files from whole-exome sequencing (Jannovar, UCSC KnownGenes, hg19)" +HOMEPAGE="http://www.sanger.ac.uk/resources/software/exomiser" +SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${PV}.BETA-distribution.zip" +# 1.16GB ! + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sci-biology/Jannovar-bin" +RDEPEND="${DEPEND}" + +pkg_postinst(){ + einfo "Please download 3.7GB file from ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/h2_db_dumps/exomiser-${PV}.BETA.h2.db.gz" + einfo "and follow README.md" +} diff --git a/sci-biology/exomiser-bin/metadata.xml b/sci-biology/exomiser-bin/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/exomiser-bin/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +