[gentoo-commits] proj/sci:master commit in: sci-biology/exomiser-bin/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     f60deed79963ffc7f97ea68afdfce84c891a2e58
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue May  5 14:39:21 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue May  5 14:39:21 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f60deed7

sci-biology/exomiser-bin: new package

Package-Manager: portage-2.2.18

 sci-biology/exomiser-bin/ChangeLog                 |  9 +++++++++
 sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild | 23 ++++++++++++++++++++++
 sci-biology/exomiser-bin/metadata.xml              |  9 +++++++++
 3 files changed, 41 insertions(+)

diff --git a/sci-biology/exomiser-bin/ChangeLog b/sci-biology/exomiser-bin/ChangeLog
new file mode 100644
index 0000000..0948caa
--- /dev/null
+++ b/sci-biology/exomiser-bin/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/exomiser-bin
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*exomiser-bin-7.0.0 (05 May 2015)
+
+  05 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +exomiser-bin-7.0.0.ebuild, +metadata.xml:
+  sci-biology/exomiser-bin: new package

diff --git a/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild b/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild
new file mode 100644
index 0000000..875db0e
--- /dev/null
+++ b/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Annotate VCF files from whole-exome sequencing (Jannovar, UCSC KnownGenes, hg19)"
+HOMEPAGE="http://www.sanger.ac.uk/resources/software/exomiser"
+SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${PV}.BETA-distribution.zip"
+# 1.16GB !
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-biology/Jannovar-bin"
+RDEPEND="${DEPEND}"
+
+pkg_postinst(){
+	einfo "Please download 3.7GB file from ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/h2_db_dumps/exomiser-${PV}.BETA.h2.db.gz"
+	einfo "and follow README.md"
+}

diff --git a/sci-biology/exomiser-bin/metadata.xml b/sci-biology/exomiser-bin/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/exomiser-bin/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>