From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 9D7A9138CCE for ; Tue, 5 May 2015 14:29:55 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 7067EE0838; Tue, 5 May 2015 14:29:53 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id E277BE0838 for ; Tue, 5 May 2015 14:29:52 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id CEBCD340A5F for ; Tue, 5 May 2015 14:29:50 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 8828998C for ; Tue, 5 May 2015 14:29:49 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1430836142.df363e30c8033d85992c787537f5864836ebf4b4.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/Jannovar-bin/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/Jannovar-bin/ChangeLog sci-biology/Jannovar-bin/Jannovar-bin-20150503.ebuild sci-biology/Jannovar-bin/metadata.xml X-VCS-Directories: sci-biology/Jannovar-bin/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: df363e30c8033d85992c787537f5864836ebf4b4 X-VCS-Branch: master Date: Tue, 5 May 2015 14:29:49 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: b8fb8378-1e99-41f5-901e-66350cf18147 X-Archives-Hash: ad6d0ff0aea32ed361c87381f68aefc5 commit: df363e30c8033d85992c787537f5864836ebf4b4 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue May 5 14:29:02 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue May 5 14:29:02 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=df363e30 sci-biology/Jannovar-bin: new package Package-Manager: portage-2.2.18 sci-biology/Jannovar-bin/ChangeLog | 9 +++++++ .../Jannovar-bin/Jannovar-bin-20150503.ebuild | 30 ++++++++++++++++++++++ sci-biology/Jannovar-bin/metadata.xml | 9 +++++++ 3 files changed, 48 insertions(+) diff --git a/sci-biology/Jannovar-bin/ChangeLog b/sci-biology/Jannovar-bin/ChangeLog new file mode 100644 index 0000000..5a6ec92 --- /dev/null +++ b/sci-biology/Jannovar-bin/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/Jannovar-bin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*Jannovar-bin-20150503 (05 May 2015) + + 05 May 2015; Martin Mokrejs + +Jannovar-bin-20150503.ebuild, +metadata.xml: + sci-biology/Jannovar-bin: new package diff --git a/sci-biology/Jannovar-bin/Jannovar-bin-20150503.ebuild b/sci-biology/Jannovar-bin/Jannovar-bin-20150503.ebuild new file mode 100644 index 0000000..890494a --- /dev/null +++ b/sci-biology/Jannovar-bin/Jannovar-bin-20150503.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit java-pkg-2 + +DESCRIPTION="Exome annotation tool" +HOMEPAGE="http://compbio.charite.de/contao/index.php/jannovar.html" +SRC_URI="http://compbio.charite.de/contao/index.php/jannovar.html?file=tl_files/Jannovar/Jannovar.jar -> Jannovar-bin-20150503.jar + http://compbio.charite.de/contao/index.php/jannovar.html?file=tl_files/Jannovar/JannovarTutorial.pdf -> JannovarTutorial.pdf + http://compbio.charite.de/contao/index.php/jannovar.html?file=tl_files/Jannovar/tutorial.tgz -> Jannovar_tutorial.tgz" + +# https://github.com/charite/jannovar +LICENSE="BSD-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=">=virtual/jdk-1.7" +RDEPEND=">=virtual/jre-1.7" + +S="${WORKDIR}" + +src_install(){ + cp "${DISTDIR}"/Jannovar-bin-20150503.jar Jannovar-bin.jar + java-pkg_newjar Jannovar-bin.jar + java-pkg_dolauncher Jannovar-bin --jar Jannovar-bin.jar +} diff --git a/sci-biology/Jannovar-bin/metadata.xml b/sci-biology/Jannovar-bin/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/Jannovar-bin/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +