From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/tophat/
Date: Sat, 2 May 2015 16:29:23 +0000 (UTC) [thread overview]
Message-ID: <1430583165.74bc48aaac3968150d9dbcc52877289811171493.mmokrejs@gentoo> (raw)
commit: 74bc48aaac3968150d9dbcc52877289811171493
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat May 2 16:12:45 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat May 2 16:12:45 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=74bc48aa
added PYTHON_USEDEP
Package-Manager: portage-2.2.18
sci-biology/tophat/ChangeLog | 4 ++++
sci-biology/tophat/tophat-2.0.12.ebuild | 4 ++--
sci-biology/tophat/tophat-2.0.13.ebuild | 4 ++--
sci-biology/tophat/tophat-2.0.14.ebuild | 4 ++--
4 files changed, 10 insertions(+), 6 deletions(-)
diff --git a/sci-biology/tophat/ChangeLog b/sci-biology/tophat/ChangeLog
index 62520a2..84e8313 100644
--- a/sci-biology/tophat/ChangeLog
+++ b/sci-biology/tophat/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.14 2015/04/07 14:35:24 jlec Exp $
+ 02 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ tophat-2.0.12.ebuild, tophat-2.0.13.ebuild, tophat-2.0.14.ebuild:
+ added PYTHON_USEDEP
+
28 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
tophat-2.0.12.ebuild, tophat-2.0.13.ebuild, tophat-2.0.14.ebuild:
sci-biology/tophat: recorded depependencies; dropped KEYWORDS until we have
diff --git a/sci-biology/tophat/tophat-2.0.12.ebuild b/sci-biology/tophat/tophat-2.0.12.ebuild
index 13bb0f4..f818f1c 100644
--- a/sci-biology/tophat/tophat-2.0.12.ebuild
+++ b/sci-biology/tophat/tophat-2.0.12.ebuild
@@ -29,8 +29,8 @@ DEPEND="dev-libs/boost"
# samtools_0.1.18 sort
# samtools_0.1.18 merge -f -h -u -Q --sam-header
RDEPEND="${DEPEND}
- >=sci-biology/samtools-0.1.17
- <=sci-biology/samtools-0.1.19
+ >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}]
+ <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}]
>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )"
# PATCHES=( "${FILESDIR}"/${P}-flags.patch )
diff --git a/sci-biology/tophat/tophat-2.0.13.ebuild b/sci-biology/tophat/tophat-2.0.13.ebuild
index 6d4cdcb..c24d230 100644
--- a/sci-biology/tophat/tophat-2.0.13.ebuild
+++ b/sci-biology/tophat/tophat-2.0.13.ebuild
@@ -29,8 +29,8 @@ DEPEND="dev-libs/boost"
# samtools_0.1.18 sort
# samtools_0.1.18 merge -f -h -u -Q --sam-header
RDEPEND="${DEPEND}
- >=sci-biology/samtools-0.1.17
- <=sci-biology/samtools-0.1.19
+ >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}]
+ <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}]
>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )"
# PATCHES=( "${FILESDIR}"/${P}-flags.patch )
diff --git a/sci-biology/tophat/tophat-2.0.14.ebuild b/sci-biology/tophat/tophat-2.0.14.ebuild
index 2091866..579641f 100644
--- a/sci-biology/tophat/tophat-2.0.14.ebuild
+++ b/sci-biology/tophat/tophat-2.0.14.ebuild
@@ -29,8 +29,8 @@ DEPEND="dev-libs/boost"
# samtools_0.1.18 sort
# samtools_0.1.18 merge -f -h -u -Q --sam-header
RDEPEND="${DEPEND}
- >=sci-biology/samtools-0.1.17
- <=sci-biology/samtools-0.1.19
+ >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}]
+ <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}]
>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )"
# see https://aur.archlinux.org/packages/tophat/ about linking issues
next reply other threads:[~2015-05-02 16:29 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-05-02 16:29 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2015-09-07 6:49 [gentoo-commits] proj/sci:master commit in: sci-biology/tophat/ Justin Lecher
2015-08-15 6:07 Justin Lecher
2015-04-28 19:04 Martin Mokrejs
2015-04-28 12:54 Martin Mokrejs
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