From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 2F22C138989 for ; Fri, 1 May 2015 22:41:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id D663BE077B; Fri, 1 May 2015 22:41:35 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 6FADAE077B for ; Fri, 1 May 2015 22:41:35 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 1952E340E55 for ; Fri, 1 May 2015 22:41:34 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 923E9998 for ; Fri, 1 May 2015 22:41:30 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1430520041.cca8132f7c8070e2d6c06e0efbe01a1860a92fba.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/hexamer/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/hexamer/ChangeLog sci-biology/hexamer/hexamer-19990330.ebuild sci-biology/hexamer/metadata.xml X-VCS-Directories: sci-biology/hexamer/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: cca8132f7c8070e2d6c06e0efbe01a1860a92fba X-VCS-Branch: master Date: Fri, 1 May 2015 22:41:30 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 7f66a42b-dbae-4d26-91a3-eedccd19d9dd X-Archives-Hash: 57953f2318f61a3c0fbccf0aa75f8bfa commit: cca8132f7c8070e2d6c06e0efbe01a1860a92fba Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri May 1 22:40:41 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri May 1 22:40:41 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cca8132f sci-biology/hexamer: new package Package-Manager: portage-2.2.18 sci-biology/hexamer/ChangeLog | 9 +++++++++ sci-biology/hexamer/hexamer-19990330.ebuild | 30 +++++++++++++++++++++++++++++ sci-biology/hexamer/metadata.xml | 9 +++++++++ 3 files changed, 48 insertions(+) diff --git a/sci-biology/hexamer/ChangeLog b/sci-biology/hexamer/ChangeLog new file mode 100644 index 0000000..7a2252f --- /dev/null +++ b/sci-biology/hexamer/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/hexamer +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*hexamer-19990330 (01 May 2015) + + 01 May 2015; Martin Mokrejs + +hexamer-19990330.ebuild, +metadata.xml: + sci-biology/hexamer: new package diff --git a/sci-biology/hexamer/hexamer-19990330.ebuild b/sci-biology/hexamer/hexamer-19990330.ebuild new file mode 100644 index 0000000..fda4818 --- /dev/null +++ b/sci-biology/hexamer/hexamer-19990330.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="Predict CDS using 6mers without deriving information from base composition" +HOMEPAGE="http://www.sanger.ac.uk/resources/software" +SRC_URI="ftp://ftp.sanger.ac.uk/pub/users/rd/hexamer.tar.gz -> hexamer-19990330.tar.gz" + +LICENSE="all-rights-reserved" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/hexamer + +src_prepare(){ + sed -e "s#cc -g#$(tc-getCC) ${CFLAGS}#" -i Makefile || die +} + +src_install(){ + dobin hexamer hextable + dodoc README +} diff --git a/sci-biology/hexamer/metadata.xml b/sci-biology/hexamer/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/hexamer/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +