[gentoo-commits] proj/sci:master commit in: sci-biology/hexamer/

[gentoo-commits] proj/sci:master commit in: sci-biology/hexamer/

[Martin Mokrejs]

commit:     cca8132f7c8070e2d6c06e0efbe01a1860a92fba
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri May  1 22:40:41 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri May  1 22:40:41 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=cca8132f

sci-biology/hexamer: new package

Package-Manager: portage-2.2.18

 sci-biology/hexamer/ChangeLog               |  9 +++++++++
 sci-biology/hexamer/hexamer-19990330.ebuild | 30 +++++++++++++++++++++++++++++
 sci-biology/hexamer/metadata.xml            |  9 +++++++++
 3 files changed, 48 insertions(+)

diff --git a/sci-biology/hexamer/ChangeLog b/sci-biology/hexamer/ChangeLog
new file mode 100644
index 0000000..7a2252f
--- /dev/null
+++ b/sci-biology/hexamer/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/hexamer
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*hexamer-19990330 (01 May 2015)
+
+  01 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +hexamer-19990330.ebuild, +metadata.xml:
+  sci-biology/hexamer: new package

diff --git a/sci-biology/hexamer/hexamer-19990330.ebuild b/sci-biology/hexamer/hexamer-19990330.ebuild
new file mode 100644
index 0000000..fda4818
--- /dev/null
+++ b/sci-biology/hexamer/hexamer-19990330.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit toolchain-funcs
+
+DESCRIPTION="Predict CDS using 6mers without deriving information from base composition"
+HOMEPAGE="http://www.sanger.ac.uk/resources/software"
+SRC_URI="ftp://ftp.sanger.ac.uk/pub/users/rd/hexamer.tar.gz -> hexamer-19990330.tar.gz"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/hexamer
+
+src_prepare(){
+	sed -e "s#cc -g#$(tc-getCC) ${CFLAGS}#" -i Makefile || die
+}
+
+src_install(){
+	dobin hexamer hextable
+	dodoc README
+}

diff --git a/sci-biology/hexamer/metadata.xml b/sci-biology/hexamer/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/hexamer/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/hexamer/

[Andrew Ammerlaan]

commit:     5624fa382cc62465456310df37cd03ef549c1cb8
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 12:03:33 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 12:03:33 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5624fa38

sci-biology/hexamer: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/hexamer/hexamer-19990330.ebuild | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/hexamer/hexamer-19990330.ebuild b/sci-biology/hexamer/hexamer-19990330.ebuild
index f8c94e98a..9124e22ad 100644
--- a/sci-biology/hexamer/hexamer-19990330.ebuild
+++ b/sci-biology/hexamer/hexamer-19990330.ebuild
@@ -1,18 +1,17 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 inherit toolchain-funcs
 
 DESCRIPTION="Predict CDS using 6mers without deriving information from base composition"
 HOMEPAGE="http://www.sanger.ac.uk/resources/software"
-SRC_URI="ftp://ftp.sanger.ac.uk/pub/users/rd/hexamer.tar.gz -> hexamer-19990330.tar.gz"
+SRC_URI="ftp://ftp.sanger.ac.uk/pub/users/rd/${PN}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="all-rights-reserved"
 SLOT="0"
 KEYWORDS="~amd64"
-IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}"
@@ -20,6 +19,7 @@ RDEPEND="${DEPEND}"
 S="${WORKDIR}"/hexamer
 
 src_prepare(){
+	default
 	sed -e "s#cc -g#$(tc-getCC) ${CFLAGS}#" -i Makefile || die
 }