From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id E58EA138989 for ; Fri, 1 May 2015 21:48:23 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 69216E0798; Fri, 1 May 2015 21:48:22 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id DEC64E0798 for ; Fri, 1 May 2015 21:48:21 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 045E9340ECC for ; Fri, 1 May 2015 21:48:21 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id D272F9A7 for ; Fri, 1 May 2015 21:48:15 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1430516858.f0525146c4040655c2e34e13a6d8ecdcaeec172b.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/lighter/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/lighter/ChangeLog sci-biology/lighter/lighter-9999.ebuild sci-biology/lighter/metadata.xml X-VCS-Directories: sci-biology/lighter/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: f0525146c4040655c2e34e13a6d8ecdcaeec172b X-VCS-Branch: master Date: Fri, 1 May 2015 21:48:15 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: fd4fb359-0768-44c1-8222-c686aca0f906 X-Archives-Hash: f9825e08b6fe3e1defe670a5bc58e85d commit: f0525146c4040655c2e34e13a6d8ecdcaeec172b Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri May 1 21:47:38 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri May 1 21:47:38 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f0525146 sci-libs/lighter: new package; contains IUSE=threads but ... does the Makefile need a tweak for -lpthreads ? ;-). Go ahead and fix this. Package-Manager: portage-2.2.18 sci-biology/lighter/ChangeLog | 10 +++++++++ sci-biology/lighter/lighter-9999.ebuild | 36 +++++++++++++++++++++++++++++++++ sci-biology/lighter/metadata.xml | 9 +++++++++ 3 files changed, 55 insertions(+) diff --git a/sci-biology/lighter/ChangeLog b/sci-biology/lighter/ChangeLog new file mode 100644 index 0000000..a24b936 --- /dev/null +++ b/sci-biology/lighter/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/lighter +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*lighter-9999 (01 May 2015) + + 01 May 2015; Martin Mokrejs + +lighter-9999.ebuild, +metadata.xml: + sci-libs/lighter: new package; contains IUSE=threads but ... does the Makefile + need a tweak for -lpthreads ? ;-). Go ahead and fix this. diff --git a/sci-biology/lighter/lighter-9999.ebuild b/sci-biology/lighter/lighter-9999.ebuild new file mode 100644 index 0000000..8e2319a --- /dev/null +++ b/sci-biology/lighter/lighter-9999.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit toolchain-funcs + +[ "$PV" == "9999" ] && inherit git-r3 + +DESCRIPTION="NGS reads corrector" +HOMEPAGE="https://github.com/mourisl/Lighter" +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/mourisl/Lighter.git" + KEYWORDS="" +else + SRC_URI="" + KEYWORDS="" +fi + +LICENSE="GPL-2+" +SLOT="0" +IUSE="threads" + +DEPEND="sys-libs/zlib + sci-libs/bloom" +RDEPEND="${DEPEND}" + +src_prepare(){ + sed -e "s#g++#$(tc-getCC)#;s#-Wall -O3#${CXXFLAGS}#" -i Makefile || die +} + +src_install(){ + dobin lighter + dodoc README.md +} diff --git a/sci-biology/lighter/metadata.xml b/sci-biology/lighter/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/lighter/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +