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From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
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Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
Message-ID: <1430433908.5b84166e0195cbf63e9954986da0798f35ad0aee.mmokrejs@gentoo>
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/trinityrnaseq/
X-VCS-Repository: proj/sci
X-VCS-Files: sci-biology/trinityrnaseq/ChangeLog sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
X-VCS-Directories: sci-biology/trinityrnaseq/
X-VCS-Committer: mmokrejs
X-VCS-Committer-Name: Martin Mokrejs
X-VCS-Revision: 5b84166e0195cbf63e9954986da0798f35ad0aee
X-VCS-Branch: master
Date: Thu, 30 Apr 2015 22:48:15 +0000 (UTC)
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commit: 5b84166e0195cbf63e9954986da0798f35ad0aee
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Apr 30 22:45:08 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Apr 30 22:45:08 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5b84166e
sci-biology/trinityrnaseq: added a note and removed broken symlink upon installation
Package-Manager: portage-2.2.18
sci-biology/trinityrnaseq/ChangeLog | 5 +++++
sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild | 3 +++
2 files changed, 8 insertions(+)
diff --git a/sci-biology/trinityrnaseq/ChangeLog b/sci-biology/trinityrnaseq/ChangeLog
index a630ba3..7a31500 100644
--- a/sci-biology/trinityrnaseq/ChangeLog
+++ b/sci-biology/trinityrnaseq/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 30 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ trinityrnaseq-2.0.6.ebuild:
+ sci-biology/trinityrnaseq: added a note and removed broken symlink upon
+ installation
+
*trinityrnaseq-2.0.6 (30 Apr 2015)
30 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
index 335d075..2ec2290 100644
--- a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
@@ -28,6 +28,8 @@ RDEPEND="${DEPEND}
# ReleaseNotes mentions that <sci-biology/samtools-1.1 is needed
# version of bundled jellyfish is 2.1.4
+# optionally install https://github.com/HpcGridRunner/HpcGridRunner/releases
+
#src_compile(){
# emake all
# emake plugins # bundled copies of TransDecoder, trimmomatic, fastool, parafly
@@ -41,6 +43,7 @@ src_install(){
dodoc trinity-plugins/fstrozzi-Fastool-7c3e034f05/README.md
#
insinto /usr/share/${PN}/util
+ rm -f util/fasta_tool
doins -r util/*
#
dobin Inchworm/bin/*