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Thu, 30 Apr 2015 20:15:12 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1430424871.26603b1f757f06f0c7e234390eecd3f5ea6ddfbd.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/pysam/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/pysam/ChangeLog sci-biology/pysam/metadata.xml sci-biology/pysam/pysam-0.6-r2.ebuild sci-biology/pysam/pysam-0.7.5.ebuild X-VCS-Directories: sci-biology/pysam/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 26603b1f757f06f0c7e234390eecd3f5ea6ddfbd X-VCS-Branch: master Date: Thu, 30 Apr 2015 20:15:12 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: e338615d-27b6-423f-93cd-58f598ca085e X-Archives-Hash: 2cef58716ba199eff1a89a4ce61aacc3 commit: 26603b1f757f06f0c7e234390eecd3f5ea6ddfbd Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Thu Apr 30 20:14:31 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Apr 30 20:14:31 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=26603b1f sci-biology/pysam: version bump; noted samtools dependencies as mentioned in download page accessible from https://code.google.com/p/pysam/downloads/list ; also added PYTHON_COMPAT for python3 Package-Manager: portage-2.2.18 sci-biology/pysam/ChangeLog | 12 ++++++++++++ sci-biology/pysam/metadata.xml | 8 ++++++++ sci-biology/pysam/pysam-0.6-r2.ebuild | 26 ++++++++++++++++++++++++++ sci-biology/pysam/pysam-0.7.5.ebuild | 26 ++++++++++++++++++++++++++ 4 files changed, 72 insertions(+) diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog new file mode 100644 index 0000000..4b24154 --- /dev/null +++ b/sci-biology/pysam/ChangeLog @@ -0,0 +1,12 @@ +# ChangeLog for sci-biology/pysam +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*pysam-0.6-r2 (30 Apr 2015) +*pysam-0.7.5 (30 Apr 2015) + + 30 Apr 2015; Martin Mokrejs +metadata.xml, + +pysam-0.6-r2.ebuild, +pysam-0.7.5.ebuild: + sci-biology/pysam: version bump; noted samtools dependencies as mentioned in + download page accessible from https://code.google.com/p/pysam/downloads/list ; + also added PYTHON_COMPAT for python3 diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml new file mode 100644 index 0000000..49afc3c --- /dev/null +++ b/sci-biology/pysam/metadata.xml @@ -0,0 +1,8 @@ + + + + sci-biology + + pysam + + diff --git a/sci-biology/pysam/pysam-0.6-r2.ebuild b/sci-biology/pysam/pysam-0.6-r2.ebuild new file mode 100644 index 0000000..d972ba1 --- /dev/null +++ b/sci-biology/pysam/pysam-0.6-r2.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/pysam/pysam-0.6-r1.ebuild,v 1.2 2015/04/13 06:22:56 jlec Exp $ + +EAPI="5" + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" +HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam" +SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-python/setuptools[${PYTHON_USEDEP}] + <=sci-biology/samtools-0.1.18" + +python_compile() { + python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing" + distutils-r1_python_compile +} diff --git a/sci-biology/pysam/pysam-0.7.5.ebuild b/sci-biology/pysam/pysam-0.7.5.ebuild new file mode 100644 index 0000000..888734b --- /dev/null +++ b/sci-biology/pysam/pysam-0.7.5.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/pysam/pysam-0.6-r1.ebuild,v 1.2 2015/04/13 06:22:56 jlec Exp $ + +EAPI="5" + +PYTHON_COMPAT=( python{2_7,3_3,3_4}) + +inherit distutils-r1 + +DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" +HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam" +SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-python/setuptools[${PYTHON_USEDEP}] + <=sci-biology/samtools-0.1.19" + +python_compile() { + python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing" + distutils-r1_python_compile +}