[gentoo-commits] proj/sci:master commit in: sci-biology/BRAKER/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     aa013962dcd3a5c45b467c96cda43c4bd8e33fad
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Apr 27 11:38:58 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Apr 27 11:38:58 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=aa013962

sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't locate Scalar/Util/Numeric.pm in @INC (you may need to install the Scalar::Util::Numeric module)

Package-Manager: portage-2.2.18

 sci-biology/BRAKER/BRAKER-20150330.ebuild | 32 +++++++++++++++++++++++++++++++
 sci-biology/BRAKER/ChangeLog              | 11 +++++++++++
 sci-biology/BRAKER/metadata.xml           |  9 +++++++++
 3 files changed, 52 insertions(+)

diff --git a/sci-biology/BRAKER/BRAKER-20150330.ebuild b/sci-biology/BRAKER/BRAKER-20150330.ebuild
new file mode 100644
index 0000000..9ee5465
--- /dev/null
+++ b/sci-biology/BRAKER/BRAKER-20150330.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PERL_EXPORT_PHASE_FUNCTIONS=no
+inherit perl-module
+
+DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS"
+# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf
+HOMEPAGE="http://bioinf.uni-greifswald.de/augustus/downloads"
+SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz -> ${P}.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	virtual/perl-Scalar-List-Utils"
+
+S="${WORKDIR}"
+
+src_install(){
+	perl_set_version
+	dobin *.pl
+	insinto ${VENDOR_LIB}/${PN}
+	doins *.pm
+	dodoc README.braker
+}

diff --git a/sci-biology/BRAKER/ChangeLog b/sci-biology/BRAKER/ChangeLog
new file mode 100644
index 0000000..0a1fbb2
--- /dev/null
+++ b/sci-biology/BRAKER/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/BRAKER
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*BRAKER-20150330 (27 Apr 2015)
+
+  27 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +BRAKER-20150330.ebuild, +metadata.xml:
+  sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't
+  locate Scalar/Util/Numeric.pm in @INC (you may need to install the
+  Scalar::Util::Numeric module)

diff --git a/sci-biology/BRAKER/metadata.xml b/sci-biology/BRAKER/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/BRAKER/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>