[gentoo-commits] proj/sci:master commit in: sci-biology/tmhmm/

[gentoo-commits] proj/sci:master commit in: sci-biology/tmhmm/

[Andrew Savchenko]

commit:     5b934429d4754e4967288ff9d1b56b720362d00e
Author:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Sun Apr 26 09:42:11 2015 +0000
Commit:     Andrew Savchenko <bircoph <AT> gentoo <DOT> org>
CommitDate: Sun Apr 26 09:42:11 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5b934429

sci-biology/tmhmm: Bump to EAPI=5 and cleanup

Package-Manager: portage-2.2.14

 sci-biology/tmhmm/ChangeLog         |  6 ++++--
 sci-biology/tmhmm/tmhmm-2.0c.ebuild | 12 ++++--------
 2 files changed, 8 insertions(+), 10 deletions(-)

diff --git a/sci-biology/tmhmm/ChangeLog b/sci-biology/tmhmm/ChangeLog
index 8ab8d4d..ac2c4a8 100644
--- a/sci-biology/tmhmm/ChangeLog
+++ b/sci-biology/tmhmm/ChangeLog
@@ -1,11 +1,13 @@
 # ChangeLog for sci-biology/tmhmm
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  26 Apr 2015; Marius Brehler <marbre@linux.sungazer.de> tmhmm-2.0c.ebuild:
+  Bump to EAPI=5 and cleanup
+
   27 Jun 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
   tmhmm-2.0c.ebuild, -tmhmm:
   QA fixes
 
   21 Aug 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
   New package, ebuild written by me
-

diff --git a/sci-biology/tmhmm/tmhmm-2.0c.ebuild b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
index 7c4e7a6..4fab9e6 100644
--- a/sci-biology/tmhmm/tmhmm-2.0c.ebuild
+++ b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI="2"
+EAPI=5
 
 DESCRIPTION="Prediction of transmembrane helices in proteins"
 HOMEPAGE="http://www.cbs.dtu.dk/services/TMHMM/"
@@ -10,12 +10,8 @@ SRC_URI="${P}.Linux.tar.gz"
 
 LICENSE="tmhmm"
 SLOT="0"
-IUSE=""
 KEYWORDS="~amd64 ~x86"
 
-DEPEND=""
-RDEPEND=""
-
 RESTRICT="fetch"
 
 S="TMHMM${PV}"
@@ -32,9 +28,9 @@ src_prepare() {
 
 src_install() {
 	exeinto /opt/${PN}/bin
-	doexe bin/* || die
+	doexe bin/*
 	insinto /opt/${PN}/lib
-	doins lib/* || die
+	doins lib/*
 	dosym /opt/${PN}/bin/tmhmm /usr/bin/tmhmm
 	dodoc README TMHMM2.0.html
 }

[gentoo-commits] proj/sci:master commit in: sci-biology/tmhmm/

[Justin Lecher]

commit:     c7d52c08688b29b1572372e9232bae951978805f
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Nov 18 19:41:30 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Nov 18 19:49:21 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c7d52c08

sci-biology/tmhmm: Fix repoman warnings

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/tmhmm/metadata.xml      | 2 +-
 sci-biology/tmhmm/tmhmm-2.0c.ebuild | 9 ++++++---
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/sci-biology/tmhmm/metadata.xml b/sci-biology/tmhmm/metadata.xml
index affa6b40c..8417d1580 100644
--- a/sci-biology/tmhmm/metadata.xml
+++ b/sci-biology/tmhmm/metadata.xml
@@ -5,4 +5,4 @@
 		<email>sci-biology@gentoo.org</email>
 		<name>Gentoo Biology Project</name>
 	</maintainer>
-	</pkgmetadata>
+</pkgmetadata>

diff --git a/sci-biology/tmhmm/tmhmm-2.0c.ebuild b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
index 91b9297dc..bdb57e464 100644
--- a/sci-biology/tmhmm/tmhmm-2.0c.ebuild
+++ b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=6
 
 DESCRIPTION="Prediction of transmembrane helices in proteins"
 HOMEPAGE="http://www.cbs.dtu.dk/services/TMHMM/"
@@ -28,8 +28,11 @@ src_prepare() {
 src_install() {
 	exeinto /opt/${PN}/bin
 	doexe bin/*
+
 	insinto /opt/${PN}/lib
 	doins lib/*
-	dosym /opt/${PN}/bin/tmhmm /usr/bin/tmhmm
+
+	dosym ../${PN}/bin/tmhmm /opt/bin/tmhmm
+
 	dodoc README TMHMM2.0.html
 }

[gentoo-commits] proj/sci:master commit in: sci-biology/tmhmm/

[Andrew Ammerlaan]

commit:     9c5606756d2151e2aa0f5a0c18cb5cfb356a5104
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 15:08:37 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 15:08:37 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=9c560675

sci-biology/tmhmm: EAPI bump

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/tmhmm/tmhmm-2.0c.ebuild | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/sci-biology/tmhmm/tmhmm-2.0c.ebuild b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
index bdb57e464..b91b27c7e 100644
--- a/sci-biology/tmhmm/tmhmm-2.0c.ebuild
+++ b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 DESCRIPTION="Prediction of transmembrane helices in proteins"
 HOMEPAGE="http://www.cbs.dtu.dk/services/TMHMM/"
@@ -21,6 +21,7 @@ pkg_nofetch() {
 }
 
 src_prepare() {
+	default
 	sed -i '1 i #!/usr/bin/env perl' "${S}"/bin/tmhmm* || die
 	sed -i '1 a $opt_basedir = "/opt/tmhmm";' "${S}"/bin/tmhmm || die
 }

[gentoo-commits] proj/sci:master commit in: sci-biology/tmhmm/

[Andrew Ammerlaan]

commit:     f9e23dff141761d84bcea7ebf8a2e0b4bfce4d95
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 19 11:01:13 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 19 11:01:13 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f9e23dff

sci-biology/tmhmm: fix MisplacedVariable

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/tmhmm/tmhmm-2.0c.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/tmhmm/tmhmm-2.0c.ebuild b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
index b91b27c7e..dc50101fa 100644
--- a/sci-biology/tmhmm/tmhmm-2.0c.ebuild
+++ b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
@@ -17,7 +17,7 @@ S="TMHMM${PV}"
 
 pkg_nofetch() {
 	einfo "Please visit ${HOMEPAGE} and obtain the file"
-	einfo "\"${SRC_URI}\", then place it in ${DISTDIR}"
+	einfo "\"${SRC_URI}\", then place it into your DISTDIR folder"
 }
 
 src_prepare() {