[gentoo-commits] proj/sci:master commit in: sci-biology/rum/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     7516202601abbac750c7fb7ed7a8c52bafb16a49
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Apr 18 01:06:45 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Apr 18 01:06:45 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=75162026

sci-biology/rum: new package

Package-Manager: portage-2.2.18

 sci-biology/rum/ChangeLog          |  9 +++++++++
 sci-biology/rum/metadata.xml       |  9 +++++++++
 sci-biology/rum/rum-2.0.5.5.ebuild | 40 ++++++++++++++++++++++++++++++++++++++
 3 files changed, 58 insertions(+)

diff --git a/sci-biology/rum/ChangeLog b/sci-biology/rum/ChangeLog
new file mode 100644
index 0000000..3dd7b15
--- /dev/null
+++ b/sci-biology/rum/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/rum
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*rum-2.0.5.5 (18 Apr 2015)
+
+  18 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+  +rum-2.0.5.5.ebuild:
+  sci-biology/rum: new package

diff --git a/sci-biology/rum/metadata.xml b/sci-biology/rum/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/rum/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/rum/rum-2.0.5.5.ebuild b/sci-biology/rum/rum-2.0.5.5.ebuild
new file mode 100644
index 0000000..c8fc01b
--- /dev/null
+++ b/sci-biology/rum/rum-2.0.5.5.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module eutils
+
+DESCRIPTION="RNA-Seq Unified Mapper (digital normalization)"
+HOMEPAGE="https://github.com/itmat/rum/wiki"
+SRC_URI="https://github.com/itmat/rum/archive/v2.0.5_05.tar.gz"
+
+# stable
+#EGIT_REPO_URI="https://github.com/PGFI/rum/tags"
+
+# dev
+#EGIT_REPO_URI="https://github.com/PGFI/rum"
+
+LICENSE="UPennState"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-lang/perl
+		dev-perl/Log-Log4perl
+		perl-core/autodie"
+RDEPEND="${DEPEND}
+	sci-biology/seqclean
+	sci-biology/blat
+	sci-biology/bowtie
+	sci-biology/seqclean"
+
+S="${WORKDIR}/${PN}-2.0.5_05"
+
+src_install(){
+	emake install
+	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/bowtie
+	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/blat
+	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/mdust
+}