[gentoo-commits] proj/sci:master commit in: sci-geosciences/cdat-lite/files/, sci-geosciences/cdat-lite/

[gentoo-commits] proj/sci:master commit in: sci-geosciences/cdat-lite/files/, sci-geosciences/cdat-lite/

[Justin Lecher]

commit:     8a6a3ba3790230189b2d38000056f2cff889782a
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 16 06:29:39 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Apr 16 06:29:39 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8a6a3ba3

In CVS

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-geosciences/cdat-lite/ChangeLog                | 26 ----------
 sci-geosciences/cdat-lite/cdat-lite-5.2.ebuild     | 44 ----------------
 sci-geosciences/cdat-lite/cdat-lite-6.0_rc2.ebuild | 40 ---------------
 sci-geosciences/cdat-lite/files/5.2-impl-dec.patch | 60 ----------------------
 .../cdat-lite/files/5.2-shared-lib.patch           | 13 -----
 sci-geosciences/cdat-lite/metadata.xml             | 12 -----
 6 files changed, 195 deletions(-)

diff --git a/sci-geosciences/cdat-lite/ChangeLog b/sci-geosciences/cdat-lite/ChangeLog
deleted file mode 100644
index 242e267..0000000
--- a/sci-geosciences/cdat-lite/ChangeLog
+++ /dev/null
@@ -1,26 +0,0 @@
-# ChangeLog for sci-geosciences/cdat-lite
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  04 Dec 2013; Justin Lecher <jlec@gentoo.org> cdat-lite-5.2.ebuild,
-  cdat-lite-6.0_rc2.ebuild, metadata.xml:
-  Bump to distutils-r1 eclass
-
-*cdat-lite-6.0_rc2 (16 Jul 2011)
-
-  16 Jul 2011; Tim Cera <tim@cerazone.net> +cdat-lite-6.0_rc2.ebuild:
-  Version bump.
-
-  29 Jun 2010; Justin Lecher <jlec@gentoo.org> +files/5.2-impl-dec.patch,
-  cdat-lite-5.2.ebuild, +files/5.2-shared-lib.patch:
-  Python ABI fixes, implicit declaration fixes
-
-  24 Apr 2010; Tim Cera <tim@cerazone.net> cdat-lite-5.2.ebuild:
-  Updated to latest style for Python ebuilds.
-
-*cdat-lite-5.2 (24 Jan 2010)
-
-  24 Jan 2010; Tim Cera <tim@cerazone.net> +cdat-lite-5.2.ebuild,
-  +metadata.xml:
-  Initial ebuild.
-

diff --git a/sci-geosciences/cdat-lite/cdat-lite-5.2.ebuild b/sci-geosciences/cdat-lite/cdat-lite-5.2.ebuild
deleted file mode 100644
index 6da749e..0000000
--- a/sci-geosciences/cdat-lite/cdat-lite-5.2.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 toolchain-funcs
-
-MY_P=${P/-/_}
-
-DESCRIPTION="Large suite of open source tools for the management and analysis of climate data"
-HOMEPAGE="http://proj.badc.rl.ac.uk/cedaservices/wiki/CdatLite"
-SRC_URI="http://ndg.nerc.ac.uk/dist/${MY_P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-COMMON_DEPEND="
-	>=sci-libs/netcdf-4.0.1
-	>=sci-libs/hdf5-1.6.4"
-DEPEND="${COMMON_DEPEND}
-	dev-python/setuptools[${PYTHON_USEDEP}]"
-RDEPEND="${COMMON_DEPEND}
-	!sci-biology/ncbi-tools"
-
-S="${WORKDIR}"/${MY_P}
-
-PATCHES=(
-	"${FILESDIR}"/${PV}-shared-lib.patch
-	"${FILESDIR}"/${PV}-impl-dec.patch
-	)
-
-python_prepare_all() {
-	find "${S}" -type l -exec rm '{}' \;
-	tc-export CC
-	sed \
-		-e 's:libhdf5.a:libhdf5.so:g' \
-		-i setup_util.py || die
-	distutils-r1_python_prepare_all
-}

diff --git a/sci-geosciences/cdat-lite/cdat-lite-6.0_rc2.ebuild b/sci-geosciences/cdat-lite/cdat-lite-6.0_rc2.ebuild
deleted file mode 100644
index a2f8d48..0000000
--- a/sci-geosciences/cdat-lite/cdat-lite-6.0_rc2.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 toolchain-funcs
-
-MY_P=${P/-/_}
-MY_P=${MY_P/_rc/rc}
-
-DESCRIPTION="Large suite of open source tools for the management and analysis of climate data"
-HOMEPAGE="http://proj.badc.rl.ac.uk/cedaservices/wiki/CdatLite"
-SRC_URI="http://ndg.nerc.ac.uk/dist/${MY_P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-COMMON_DEPEND="
-	>=sci-libs/netcdf-4.0.1
-	>=sci-libs/hdf5-1.6.4"
-DEPEND="${COMMON_DEPEND}
-	dev-python/setuptools[${PYTHON_USEDEP}]"
-RDEPEND="${COMMON_DEPEND}
-	!sci-biology/ncbi-tools"
-
-S="${WORKDIR}/${MY_P}"
-
-python_prepare_all() {
-	find "${S}" -type l -exec rm '{}' \;
-	tc-export CC
-	sed \
-		-e 's:libhdf5.a:libhdf5.so:g' \
-		-i setup_util.py || die
-	distutils-r1_python_prepare_all
-}

diff --git a/sci-geosciences/cdat-lite/files/5.2-impl-dec.patch b/sci-geosciences/cdat-lite/files/5.2-impl-dec.patch
deleted file mode 100644
index 866ae72..0000000
--- a/sci-geosciences/cdat-lite/files/5.2-impl-dec.patch
+++ /dev/null
@@ -1,60 +0,0 @@
-diff --git a/Packages/cdms2/Src/bindex.c b/Packages/cdms2/Src/bindex.c
-index 9a91a3b..d8e6e4d 100644
---- a/Packages/cdms2/Src/bindex.c
-+++ b/Packages/cdms2/Src/bindex.c
-@@ -2,6 +2,7 @@
-    with data on non-rectilinear grids.
-  */
- #include <math.h>
-+#include <stdio.h>
- /* NBINI, NBINJ should match definition in bindex.bindexHorizontalGrid */
- #define NBINI 720			     /* number of bins in the i (longitude) direction */
- #define NBINJ 360			     /* number of bins in the j (latitude) direction */
-diff --git a/libcdms/src/cdunif/cdunifnc.c b/libcdms/src/cdunif/cdunifnc.c
-index 75f2b2f..8af93e1 100644
---- a/libcdms/src/cdunif/cdunifnc.c
-+++ b/libcdms/src/cdunif/cdunifnc.c
-@@ -28,6 +28,7 @@
- 
- #ifdef netcdf
- #include <stdlib.h>
-+#include <string.h>
- #include "netcdf.h"
- #include "cdunifint.h"
- 
-diff --git a/libcdms/src/cdunif/gaddes.c b/libcdms/src/cdunif/gaddes.c
-index aac8152..0dcd634 100644
---- a/libcdms/src/cdunif/gaddes.c
-+++ b/libcdms/src/cdunif/gaddes.c
-@@ -20,6 +20,7 @@
- #include <stdio.h>
- #include <math.h>
- #include <ctype.h>
-+#include <string.h>
- #ifndef __APPLE__
- #include <malloc.h>
- #endif
-diff --git a/libcdms/src/cdunif/gaio.c b/libcdms/src/cdunif/gaio.c
-index c64ae83..21b61f8 100644
---- a/libcdms/src/cdunif/gaio.c
-+++ b/libcdms/src/cdunif/gaio.c
-@@ -4,6 +4,7 @@
- 
- #include <math.h>
- #include <stdio.h>
-+#include <string.h>
- #ifndef __APPLE__
- #include <malloc.h>
- #endif
-diff --git a/libcdms/src/db_util/cdRegTrfm.c b/libcdms/src/db_util/cdRegTrfm.c
-index cd88441..97d0185 100644
---- a/libcdms/src/db_util/cdRegTrfm.c
-+++ b/libcdms/src/db_util/cdRegTrfm.c
-@@ -32,6 +32,7 @@
-  */
- 
- #include <stdio.h>
-+#include <string.h>
- #include <cdmsint.h>
- #include <isdb.h>
- 					     /* copy CDMS geom to NEONS ngeom */

diff --git a/sci-geosciences/cdat-lite/files/5.2-shared-lib.patch b/sci-geosciences/cdat-lite/files/5.2-shared-lib.patch
deleted file mode 100644
index 81bec96..0000000
--- a/sci-geosciences/cdat-lite/files/5.2-shared-lib.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/setup_util.py b/setup_util.py
-index 1eea295..e17342a 100644
---- a/setup_util.py
-+++ b/setup_util.py
-@@ -116,7 +116,7 @@ def check_ifnetcdf4(netcdf4_incdir):
- 
- netcdf_incdir, netcdf_libdir = DepFinder('NetCDF', 'NETCDF_HOME',
-                                          includefile='netcdf.h',
--                                         libfile='libnetcdf.a').find()
-+                                         libfile='libnetcdf.so').find()
- # If using NetCDF4 find the HDF5 libraries
- if check_ifnetcdf4(netcdf_incdir):
-     print 'NetCDF4 detected.  Including HDF libraries'

diff --git a/sci-geosciences/cdat-lite/metadata.xml b/sci-geosciences/cdat-lite/metadata.xml
deleted file mode 100644
index 50f2b52..0000000
--- a/sci-geosciences/cdat-lite/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <herd>sci-geosciences</herd>
-  <maintainer>
-    <email>tim@cerazone.net</email>
-    <name>Tim Cera</name>
-  </maintainer>
-  <longdescription lang="en">
-CDAT-Lite is a large suite of open source tools for the management and analysis of climate data.
-</longdescription>
-</pkgmetadata>