[gentoo-commits] proj/sci:master commit in: sci-biology/abacas/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     3b0ca41e88d8131cf6aa944ff3da23ff743bd3a0
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Mar 31 16:19:08 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Mar 31 16:19:08 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b0ca41e

sci-biology/abacas: new package

Package-Manager: portage-2.2.18

 sci-biology/abacas/ChangeLog           |  9 +++++++++
 sci-biology/abacas/abacas-1.3.1.ebuild | 33 +++++++++++++++++++++++++++++++++
 sci-biology/abacas/metadata.xml        |  9 +++++++++
 3 files changed, 51 insertions(+)

diff --git a/sci-biology/abacas/ChangeLog b/sci-biology/abacas/ChangeLog
new file mode 100644
index 0000000..7f3ad38
--- /dev/null
+++ b/sci-biology/abacas/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/abacas
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*abacas-1.3.1 (31 Mar 2015)
+
+  31 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +abacas-1.3.1.ebuild, +metadata.xml:
+  sci-biology/abacas: new package

diff --git a/sci-biology/abacas/abacas-1.3.1.ebuild b/sci-biology/abacas/abacas-1.3.1.ebuild
new file mode 100644
index 0000000..e44862d
--- /dev/null
+++ b/sci-biology/abacas/abacas-1.3.1.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Order and orientate contigs, design primers for gap closing"
+HOMEPAGE="http://abacas.sourceforge.net"
+SRC_URI="http://downloads.sourceforge.net/project/abacas/abacas.1.3.1.pl"
+
+LICENSE="GPL-2+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	dev-lang/perl
+	sci-biology/mummer"
+
+S="${WORKDIR}"
+
+src_prepare(){
+	cp -p "${DISTDIR}"/abacas.1.3.1.pl abacas.pl || die
+	sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' -i abacas.pl || die
+}
+src_install(){
+	dobin abacas.pl
+}
+
+pkg_postinst(){
+	einfo "To view the results use Artemis ACT (sci-biology/artemis)"
+}

diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/abacas/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>