From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id F321F138CC5 for ; Mon, 23 Mar 2015 08:10:32 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 7E5E3E0858; Mon, 23 Mar 2015 08:10:32 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 23001E0853 for ; Mon, 23 Mar 2015 08:10:32 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 343A434099A for ; Mon, 23 Mar 2015 08:10:31 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 34D6A14599 for ; Mon, 23 Mar 2015 08:10:26 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1427098207.e563f4cbbde41c690dc1cb47489e638faebba9cf.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: / X-VCS-Repository: proj/sci X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: e563f4cbbde41c690dc1cb47489e638faebba9cf X-VCS-Branch: master Date: Mon, 23 Mar 2015 08:10:26 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: a3cc9ae4-0cd5-4e77-b3db-649e5c7206fe X-Archives-Hash: 28f933882d1c0350514fc1a93445c793 commit: e563f4cbbde41c690dc1cb47489e638faebba9cf Author: Justin Lecher gentoo org> AuthorDate: Mon Mar 23 08:10:07 2015 +0000 Commit: Justin Lecher gentoo org> CommitDate: Mon Mar 23 08:10:07 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e563f4cb Merge remote-tracking branch 'github/master' * github/master: sci-libs/acml: Fix #543740 (drop fma4) Fixed upstream bug https://github.com/broadinstitute/IGV/issues/114 as requested by Martin Mokrejŝ (note: i've excluded the test code by passing -Dnotests=true to ant so it may break at some point). Signed-off-by: Justin Lecher gentoo.org> sci-biology/igv/ChangeLog | 10 ++++ sci-biology/igv/Manifest | 2 +- sci-biology/igv/igv-2.3.44.ebuild | 109 +++++++++++++------------------------ sci-libs/acml/ChangeLog | 3 + sci-libs/acml/acml-6.1.0.31.ebuild | 3 +- 5 files changed, 53 insertions(+), 74 deletions(-) diff --cc sci-biology/igv/ChangeLog index bb4f3a0,9eb94ff..57365d0 --- a/sci-biology/igv/ChangeLog +++ b/sci-biology/igv/ChangeLog @@@ -2,9 -2,16 +2,19 @@@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 21 Mar 2015; Johann Schmitz igv-2.3.44.ebuild: + Fixed upstream bug https://github.com/broadinstitute/IGV/issues/114 as + requested by Martin Mokrejŝ (note: i've excluded the test code by passing + -Dnotests=true to ant so it may break at some point). Also improved the + ebuild by unbundling stuff we already have in portage. There are quite a + number of libraries which aren't used for compilation which may be needed at + runtime. I haven't tested the program in depth: it started at didn't throw + errors when i clicked around - everything else is way beyond my knowledge. + Improved the ebuild for sci-biology/igv + + 21 Mar 2015; Martin Mokrejs igv-2.3.44.ebuild: + sci-biology/igv: fix inherit to git-r3 + 17 Mar 2015; Martin Mokrejs igv-2.3.44.ebuild: fix inherit to use git instead of previously used subversion