From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 12743138CC5 for ; Sat, 21 Mar 2015 01:15:47 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 913DFE09B9; Sat, 21 Mar 2015 01:15:45 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 28510E09B9 for ; Sat, 21 Mar 2015 01:15:44 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id D484234093A for ; Sat, 21 Mar 2015 01:15:42 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 75DFD142EE for ; Sat, 21 Mar 2015 01:15:39 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1426900466.0b7f4bf5b3512c1ee1107bb8d76b962c69e0a1b9.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/KaKs_Calculator/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/KaKs_Calculator/ChangeLog sci-biology/KaKs_Calculator/KaKs_Calculator-1.2.ebuild sci-biology/KaKs_Calculator/metadata.xml X-VCS-Directories: sci-biology/KaKs_Calculator/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 0b7f4bf5b3512c1ee1107bb8d76b962c69e0a1b9 X-VCS-Branch: master Date: Sat, 21 Mar 2015 01:15:39 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 53ee1963-f7a4-483b-b89c-c96fa612e847 X-Archives-Hash: 8cab30c5575d9e325da4022561d34a69 commit: 0b7f4bf5b3512c1ee1107bb8d76b962c69e0a1b9 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sat Mar 21 01:14:26 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sat Mar 21 01:14:26 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0b7f4bf5 sci-biology/KaKs_Calculator: new package but code does not compile; awaiting some answer from upstream http://cbb.big.ac.cn/Zhang_Zhang Package-Manager: portage-2.2.15 sci-biology/KaKs_Calculator/ChangeLog | 10 ++++++ .../KaKs_Calculator/KaKs_Calculator-1.2.ebuild | 38 ++++++++++++++++++++++ sci-biology/KaKs_Calculator/metadata.xml | 9 +++++ 3 files changed, 57 insertions(+) diff --git a/sci-biology/KaKs_Calculator/ChangeLog b/sci-biology/KaKs_Calculator/ChangeLog new file mode 100644 index 0000000..2a3e92f --- /dev/null +++ b/sci-biology/KaKs_Calculator/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/KaKs_Calculator +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*KaKs_Calculator-1.2 (21 Mar 2015) + + 21 Mar 2015; Martin Mokrejs + +KaKs_Calculator-1.2.ebuild, +metadata.xml: + sci-biology/KaKs_Calculator: new package but code does not compile; awaiting + some answer from upstream http://cbb.big.ac.cn/Zhang_Zhang diff --git a/sci-biology/KaKs_Calculator/KaKs_Calculator-1.2.ebuild b/sci-biology/KaKs_Calculator/KaKs_Calculator-1.2.ebuild new file mode 100644 index 0000000..5d9bb67 --- /dev/null +++ b/sci-biology/KaKs_Calculator/KaKs_Calculator-1.2.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit eutils toolchain-funcs + +DESCRIPTION="Calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates" +HOMEPAGE="https://code.google.com/p/kaks-calculator" +SRC_URI="https://kaks-calculator.googlecode.com/files/KaKs_Calculator"${PV}".tar.gz + https://kaks-calculator.googlecode.com/files/parseFastaIntoAXT.pl" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sci-biology/ParaAT" +RDEPEND=" + dev-lang/perl + ${DEPEND}" + +S="${WORKDIR}"/KaKs_Calculator"${PV}" + +src_prepare(){ + sed -e "s/^CC = g++/CC="$(tc-getCXX)"/; s/^CFLAGS/#CFLAGS/" -i src/makefile +} + +src_compile(){ + cd src || die + emake +} + +src_install(){ + dobin "${DISTDIR}"/parseFastaIntoAXT.pl + dobin src/{KaKs_Calculator,AXTConvertor,ConPairs} +} diff --git a/sci-biology/KaKs_Calculator/metadata.xml b/sci-biology/KaKs_Calculator/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/KaKs_Calculator/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +