From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 48E5B138CC4 for ; Wed, 18 Mar 2015 13:06:22 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id DBA91E0972; Wed, 18 Mar 2015 13:06:21 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 8EEB4E0972 for ; Wed, 18 Mar 2015 13:06:21 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 54A6634068A for ; Wed, 18 Mar 2015 13:06:20 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 0A67914018 for ; Wed, 18 Mar 2015 13:06:19 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1426683887.72636efc7346f744696721df0c86bbb01273864b.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/kmergenie/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/kmergenie/ChangeLog sci-biology/kmergenie/kmergenie-1.6950.ebuild X-VCS-Directories: sci-biology/kmergenie/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 72636efc7346f744696721df0c86bbb01273864b X-VCS-Branch: master Date: Wed, 18 Mar 2015 13:06:19 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: cf5431ee-18bf-45eb-8de7-71eafe2fa794 X-Archives-Hash: 40ff95ede8dd68800acb845127fe2b4b commit: 72636efc7346f744696721df0c86bbb01273864b Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Wed Mar 18 13:04:47 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Wed Mar 18 13:04:47 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=72636efc install the real binary, add dependency of external python module; the DEPEND line still needs a fix: DEPEND: Invalid atom (Invalid use dep: ''), token 1 Package-Manager: portage-2.2.15 sci-biology/kmergenie/ChangeLog | 5 +++++ sci-biology/kmergenie/kmergenie-1.6950.ebuild | 7 +++++-- 2 files changed, 10 insertions(+), 2 deletions(-) diff --git a/sci-biology/kmergenie/ChangeLog b/sci-biology/kmergenie/ChangeLog index 482c032..93a1fa9 100644 --- a/sci-biology/kmergenie/ChangeLog +++ b/sci-biology/kmergenie/ChangeLog @@ -2,6 +2,11 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 18 Mar 2015; Martin Mokrejs + kmergenie-1.6950.ebuild: + install the real binary, add dependency of external python module; the DEPEND + line still needs a fix: DEPEND: Invalid atom (Invalid use dep: ''), token 1 + *kmergenie-1.6950 (13 Mar 2015) 13 Mar 2015; Martin Mokrejs diff --git a/sci-biology/kmergenie/kmergenie-1.6950.ebuild b/sci-biology/kmergenie/kmergenie-1.6950.ebuild index 91abe45..46f37da 100644 --- a/sci-biology/kmergenie/kmergenie-1.6950.ebuild +++ b/sci-biology/kmergenie/kmergenie-1.6950.ebuild @@ -17,7 +17,9 @@ SLOT="0" KEYWORDS="~amd64" IUSE="" -DEPEND="dev-lang/R" +# dev-python/docopt[${PYTHON_USEDEP}] +DEPEND="dev-python/docopt + dev-lang/R" RDEPEND="${DEPEND}" # Type `make` in the KmerGenie directory @@ -27,6 +29,7 @@ RDEPEND="${DEPEND}" src_prepare(){ sed -e 's#-O4##' -i makefile || die + sed -e 's#third_party.##' -i kmergenie || die } src_compile(){ @@ -34,7 +37,7 @@ src_compile(){ } src_install(){ - dobin kmergenie + dobin kmergenie specialk dodoc README # TODO: install also the python files }