From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/discrover/
Date: Wed, 18 Mar 2015 07:23:35 +0000 (UTC) [thread overview]
Message-ID: <1426663402.ba80f4042addbeb24766f8763c60e1322f4ac5bc.jlec@gentoo> (raw)
commit: ba80f4042addbeb24766f8763c60e1322f4ac5bc
Author: Jonas Maaskola <jonas <AT> maaskola <DOT> de>
AuthorDate: Wed Mar 18 00:09:04 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Mar 18 07:23:22 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ba80f404
sci-biology/discrover: version bump; drop USE flag
Package-Manager: portage-2.2.14
sci-biology/discrover/ChangeLog | 6 ++++++
...scrover-1.5.2.ebuild => discrover-1.6.0.ebuild} | 18 ++---------------
sci-biology/discrover/discrover-9999.ebuild | 18 ++---------------
sci-biology/discrover/metadata.xml | 23 ++++++++++------------
4 files changed, 20 insertions(+), 45 deletions(-)
diff --git a/sci-biology/discrover/ChangeLog b/sci-biology/discrover/ChangeLog
index aba75b4..f4e2dcd 100644
--- a/sci-biology/discrover/ChangeLog
+++ b/sci-biology/discrover/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*discrover-1.6.0 (18 Mar 2015)
+
+ 18 Mar 2015; Jonas Maaskola <jonas@maaskola.de> +discrover-1.6.0.ebuild,
+ -discrover-1.5.2.ebuild, discrover-9999.ebuild, metadata.xml:
+ sci-biology/discrover: version bump; drop USE flag
+
18 Feb 2015; Justin Lecher <jlec@gentoo.org> discrover-1.5.2.ebuild,
discrover-9999.ebuild, metadata.xml:
sci-biology/discrover: fix SLOT operators; correct ruby deps
diff --git a/sci-biology/discrover/discrover-1.5.2.ebuild b/sci-biology/discrover/discrover-1.6.0.ebuild
similarity index 83%
rename from sci-biology/discrover/discrover-1.5.2.ebuild
rename to sci-biology/discrover/discrover-1.6.0.ebuild
index f0992e2..5f1281c 100644
--- a/sci-biology/discrover/discrover-1.5.2.ebuild
+++ b/sci-biology/discrover/discrover-1.6.0.ebuild
@@ -3,11 +3,7 @@
# $Header: $
EAPI=5
-
-USE_RUBY="ruby19"
-RUBY_OPTIONAL=yes
-
-inherit cmake-utils ruby-fakegem
+inherit cmake-utils
DESCRIPTION="A sequence motif discovery tool that uses discriminative learning"
HOMEPAGE="https://github.com/maaskola/discrover"
@@ -16,21 +12,12 @@ SRC_URI="https://github.com/maaskola/discrover/archive/${PV}.tar.gz -> ${P}.tar.
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE="+cairo dreme doc +lto tikzlogo misc_scripts +rmathlib tcmalloc"
+IUSE="+cairo dreme doc +lto misc_scripts +rmathlib tcmalloc"
RDEPEND="
dev-libs/boost
cairo? ( x11-libs/cairo )
dreme? ( sci-biology/meme )
- tikzlogo? (
- $(ruby_implementations_depend)
- dev-texlive/texlive-latex
- dev-texlive/texlive-latexextra
- dev-tex/pgf
- dev-tex/xcolor
- media-gfx/imagemagick
- )
- misc_scripts? ( $(ruby_implementations_depend) )
rmathlib? ( dev-lang/R )
tcmalloc? ( dev-util/google-perftools )
"
@@ -58,7 +45,6 @@ src_configure() {
$(cmake-utils_use_with dreme DREME)
$(cmake-utils_use_with doc DOC)
$(cmake-utils_use_with lto LTO)
- $(cmake-utils_use_with tikzlogo TIKZLOGO)
$(cmake-utils_use_with misc_scripts MISC_SCRIPTS)
$(cmake-utils_use_with rmathlib RMATHLIB)
$(cmake-utils_use_with tcmalloc TCMALLOC)
diff --git a/sci-biology/discrover/discrover-9999.ebuild b/sci-biology/discrover/discrover-9999.ebuild
index 8131e9b..6958803 100644
--- a/sci-biology/discrover/discrover-9999.ebuild
+++ b/sci-biology/discrover/discrover-9999.ebuild
@@ -3,11 +3,7 @@
# $Header: $
EAPI=5
-
-USE_RUBY="ruby19"
-RUBY_OPTIONAL=yes
-
-inherit cmake-utils git-r3 ruby-fakegem
+inherit cmake-utils git-r3
DESCRIPTION="A sequence motif discovery tool that uses discriminative learning"
HOMEPAGE="https://github.com/maaskola/discrover"
@@ -17,21 +13,12 @@ EGIT_REPO_URI="https://github.com/maaskola/${PN}"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE="+cairo dreme doc +lto tikzlogo misc_scripts +rmathlib tcmalloc"
+IUSE="+cairo dreme doc +lto misc_scripts +rmathlib tcmalloc"
RDEPEND="
dev-libs/boost
cairo? ( x11-libs/cairo )
dreme? ( sci-biology/meme )
- tikzlogo? (
- $(ruby_implementations_depend)
- dev-texlive/texlive-latex
- dev-texlive/texlive-latexextra
- dev-tex/pgf
- dev-tex/xcolor
- media-gfx/imagemagick
- )
- misc_scripts? ( $(ruby_implementations_depend) )
rmathlib? ( dev-lang/R )
tcmalloc? ( dev-util/google-perftools )
"
@@ -59,7 +46,6 @@ src_configure() {
$(cmake-utils_use_with dreme DREME)
$(cmake-utils_use_with doc DOC)
$(cmake-utils_use_with lto LTO)
- $(cmake-utils_use_with tikzlogo TIKZLOGO)
$(cmake-utils_use_with misc_scripts MISC_SCRIPTS)
$(cmake-utils_use_with rmathlib RMATHLIB)
$(cmake-utils_use_with tcmalloc TCMALLOC)
diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml
index 6bfaf6c..fb652d7 100644
--- a/sci-biology/discrover/metadata.xml
+++ b/sci-biology/discrover/metadata.xml
@@ -7,22 +7,19 @@
</maintainer>
<use>
<flag name="cairo">
- Use Cairo for sequence logo plotting capabilities
- </flag>
+ Use Cairo for sequence logo plotting capabilities
+ </flag>
<flag name="dreme">
- Enable usage of DREME from the MEME package for seeding
- </flag>
+ Enable usage of DREME from the MEME package for seeding
+ </flag>
<flag name="lto">
- Compile with link-time optimization (LTO)
- </flag>
- <flag name="tikzlogo">
- Enable LaTeX/TikZ based ruby script for sequence logo drawing
- </flag>
+ Compile with link-time optimization (LTO)
+ </flag>
<flag name="misc_scripts">
- Install miscellaneous scripts, e.g. for sequence length statistics
- </flag>
+ Install miscellaneous scripts
+ </flag>
<flag name="rmathlib">
- Link to the standalone Rmathlib for statistical routines
- </flag>
+ Link to the standalone Rmathlib for statistical routines
+ </flag>
</use>
</pkgmetadata>
next reply other threads:[~2015-03-18 7:23 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-03-18 7:23 Justin Lecher [this message]
-- strict thread matches above, loose matches on Subject: below --
2020-09-27 4:32 [gentoo-commits] proj/sci:master commit in: sci-biology/discrover/ Horea Christian
2015-03-18 7:23 Justin Lecher
2015-02-18 16:41 Justin Lecher
2015-01-31 20:19 Christoph Junghans
2015-01-06 0:19 Christoph Junghans
2015-01-06 0:19 Christoph Junghans
2014-12-16 23:01 Christoph Junghans
2014-12-02 8:19 Justin Lecher
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