From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 58819138CBD for ; Wed, 11 Mar 2015 20:26:53 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 27B31E095A; Wed, 11 Mar 2015 20:26:52 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id D08D5E095A for ; Wed, 11 Mar 2015 20:26:51 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 311A8340B83 for ; Wed, 11 Mar 2015 20:26:50 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 92E2B138B8 for ; Wed, 11 Mar 2015 20:26:43 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1426105551.e7341cf8c7b18b1d2288a690636b912fe7dd8870.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/freebayes/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/freebayes/ChangeLog sci-biology/freebayes/freebayes-9999.ebuild X-VCS-Directories: sci-biology/freebayes/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: e7341cf8c7b18b1d2288a690636b912fe7dd8870 X-VCS-Branch: master Date: Wed, 11 Mar 2015 20:26:43 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 4ab3cd4a-8e01-47ed-947f-e467404c60d5 X-Archives-Hash: 711725a9c8ae25ee9f76dd70ca41770f commit: e7341cf8c7b18b1d2288a690636b912fe7dd8870 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Wed Mar 11 20:25:51 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Wed Mar 11 20:25:51 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e7341cf8 ebuild cleanup; the git clone --recursive flag does not work Package-Manager: portage-2.2.15 sci-biology/freebayes/ChangeLog | 6 +++++- sci-biology/freebayes/freebayes-9999.ebuild | 18 ++++++++++++------ 2 files changed, 17 insertions(+), 7 deletions(-) diff --git a/sci-biology/freebayes/ChangeLog b/sci-biology/freebayes/ChangeLog index 9374edf..8915dfe 100644 --- a/sci-biology/freebayes/ChangeLog +++ b/sci-biology/freebayes/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/freebayes -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 11 Mar 2015; Martin Mokrejs + freebayes-9999.ebuild: + ebuild cleanup; the git clone --recursive flag does not work + 16 Sep 2014; Christoph Junghans freebayes-9999.ebuild: fixed DESCRIPTION diff --git a/sci-biology/freebayes/freebayes-9999.ebuild b/sci-biology/freebayes/freebayes-9999.ebuild index 3d40b37..f43e1d2 100644 --- a/sci-biology/freebayes/freebayes-9999.ebuild +++ b/sci-biology/freebayes/freebayes-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -10,18 +10,24 @@ inherit eutils DESCRIPTION="Bayesian gen. variant detector to find small polymorphisms: SNPs, indels, MNPs and complex events" HOMEPAGE="https://github.com/ekg/freebayes" -EGIT_REPO_URI="git://github.com/ekg/freebayes.git" -# need top checkout vcflib/ as well -# +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="git://github.com/ekg/freebayes.git" + EGIT_OPTIONS="--recursive --recurse-submodules" + KEYWORDS="" +else + EGIT_REPO_URI="git://github.com/ekg/freebayes.git" + EGIT_OPTIONS="--recursive --recurse-submodules" + EGIT_BRANCH="v0.9.21" + KEYWORDS="" +fi + # To build freebayes you must use git to also download its submodules. # Do so by downloading freebayes again using this command (note --recursive flag): # git clone --recursive git://github.com/ekg/freebayes.git -# LICENSE="MIT" SLOT="0" -KEYWORDS="" IUSE="" DEPEND=""