From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id C75E5138ACE for ; Mon, 9 Mar 2015 17:12:15 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 06A85E086E; Mon, 9 Mar 2015 17:12:14 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 99EC7E086E for ; Mon, 9 Mar 2015 17:12:13 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 38CCF3409F1 for ; Mon, 9 Mar 2015 17:12:12 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id AD6951364B for ; Mon, 9 Mar 2015 17:12:07 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1425921080.7b043728312fa444242a9713c43332cd0bea44b5.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ORFcor/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ORFcor/ChangeLog sci-biology/ORFcor/ORFcor-20130507.ebuild sci-biology/ORFcor/metadata.xml X-VCS-Directories: sci-biology/ORFcor/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 7b043728312fa444242a9713c43332cd0bea44b5 X-VCS-Branch: master Date: Mon, 9 Mar 2015 17:12:07 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: a33bf617-9678-4224-97c5-b7896e367e16 X-Archives-Hash: 21f16082b824176dc580266f2373dbb1 commit: 7b043728312fa444242a9713c43332cd0bea44b5 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Mon Mar 9 17:11:20 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Mar 9 17:11:20 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b043728 new package, working ebuild Package-Manager: portage-2.2.15 sci-biology/ORFcor/ChangeLog | 9 +++++++++ sci-biology/ORFcor/ORFcor-20130507.ebuild | 27 +++++++++++++++++++++++++++ sci-biology/ORFcor/metadata.xml | 9 +++++++++ 3 files changed, 45 insertions(+) diff --git a/sci-biology/ORFcor/ChangeLog b/sci-biology/ORFcor/ChangeLog new file mode 100644 index 0000000..7119777 --- /dev/null +++ b/sci-biology/ORFcor/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/ORFcor +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*ORFcor-20130507 (09 Mar 2015) + + 09 Mar 2015; Martin Mokrejs + +ORFcor-20130507.ebuild, +metadata.xml: + new package, working ebuild diff --git a/sci-biology/ORFcor/ORFcor-20130507.ebuild b/sci-biology/ORFcor/ORFcor-20130507.ebuild new file mode 100644 index 0000000..ad9c638 --- /dev/null +++ b/sci-biology/ORFcor/ORFcor-20130507.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Automated editor of protein-coding sequences" +HOMEPAGE="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058387" +SRC_URI="http://www.currielab.wisc.edu/files/ORFcor.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="dev-lang/perl + sci-biology/hmmer + sci-biology/muscle + dev-perl/Parallel-ForkManager" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/ORFcor + +src_install(){ + dobin *.pl + dodoc README +} diff --git a/sci-biology/ORFcor/metadata.xml b/sci-biology/ORFcor/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/ORFcor/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +