From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ORFcor/
Date: Mon, 9 Mar 2015 17:12:07 +0000 (UTC) [thread overview]
Message-ID: <1425921080.7b043728312fa444242a9713c43332cd0bea44b5.mmokrejs@gentoo> (raw)
commit: 7b043728312fa444242a9713c43332cd0bea44b5
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar 9 17:11:20 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar 9 17:11:20 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b043728
new package, working ebuild
Package-Manager: portage-2.2.15
sci-biology/ORFcor/ChangeLog | 9 +++++++++
sci-biology/ORFcor/ORFcor-20130507.ebuild | 27 +++++++++++++++++++++++++++
sci-biology/ORFcor/metadata.xml | 9 +++++++++
3 files changed, 45 insertions(+)
diff --git a/sci-biology/ORFcor/ChangeLog b/sci-biology/ORFcor/ChangeLog
new file mode 100644
index 0000000..7119777
--- /dev/null
+++ b/sci-biology/ORFcor/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/ORFcor
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ORFcor-20130507 (09 Mar 2015)
+
+ 09 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +ORFcor-20130507.ebuild, +metadata.xml:
+ new package, working ebuild
diff --git a/sci-biology/ORFcor/ORFcor-20130507.ebuild b/sci-biology/ORFcor/ORFcor-20130507.ebuild
new file mode 100644
index 0000000..ad9c638
--- /dev/null
+++ b/sci-biology/ORFcor/ORFcor-20130507.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Automated editor of protein-coding sequences"
+HOMEPAGE="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058387"
+SRC_URI="http://www.currielab.wisc.edu/files/ORFcor.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="dev-lang/perl
+ sci-biology/hmmer
+ sci-biology/muscle
+ dev-perl/Parallel-ForkManager"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/ORFcor
+
+src_install(){
+ dobin *.pl
+ dodoc README
+}
diff --git a/sci-biology/ORFcor/metadata.xml b/sci-biology/ORFcor/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/ORFcor/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
next reply other threads:[~2015-03-09 17:12 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-03-09 17:12 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2015-04-17 23:56 [gentoo-commits] proj/sci:master commit in: sci-biology/ORFcor/ Martin Mokrejs
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