[gentoo-commits] proj/sci:master commit in: sci-biology/sickle/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     53f3408793c23dd0612952d22bc4a6c599e2b295
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar  9 16:44:10 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar  9 16:44:10 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=53f34087

respect CC and CFLAGS; added an ebuild for latest release tarball, works

Package-Manager: portage-2.2.15

 sci-biology/sickle/ChangeLog                            |  6 ++++++
 .../sickle/{sickle-9999.ebuild => sickle-1.33.ebuild}   | 17 ++++++++++++++---
 sci-biology/sickle/sickle-9999.ebuild                   | 17 ++++++++++++++---
 3 files changed, 34 insertions(+), 6 deletions(-)

diff --git a/sci-biology/sickle/ChangeLog b/sci-biology/sickle/ChangeLog
index 443ff95..4d539a2 100644
--- a/sci-biology/sickle/ChangeLog
+++ b/sci-biology/sickle/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*sickle-1.33 (09 Mar 2015)
+
+  09 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +sickle-1.33.ebuild,
+  sickle-9999.ebuild:
+  respect CC and CFLAGS; added an ebuild for latest release tarball, works
+
   15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> sickle-9999.ebuild:
   correct package description
 

diff --git a/sci-biology/sickle/sickle-9999.ebuild b/sci-biology/sickle/sickle-1.33.ebuild
similarity index 52%
copy from sci-biology/sickle/sickle-9999.ebuild
copy to sci-biology/sickle/sickle-1.33.ebuild
index 022474e..2288aea 100644
--- a/sci-biology/sickle/sickle-9999.ebuild
+++ b/sci-biology/sickle/sickle-1.33.ebuild
@@ -4,21 +4,32 @@
 
 EAPI=5
 
-inherit eutils git-r3
+inherit eutils eutils toolchain-funcs
+
+[ "$PV" == "9999" ] && inherit git-r3
 
 DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data from Illumina/Solexa"
 HOMEPAGE="https://github.com/najoshi/sickle"
-EGIT_REPO_URI="https://github.com/najoshi/sickle"
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="https://github.com/najoshi/sickle"
+	KEYWORDS=""
+else
+	SRC_URI="https://github.com/najoshi/sickle/archive/v"${PV}".tar.gz"
+	KEYWORDS="~amd64"
+fi
 
 LICENSE="MIT"
 SLOT="0"
-KEYWORDS="~amd64"
 IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}
 	sys-libs/zlib"
 
+src_prepare(){
+	sed -e "s#-pedantic#-pedantic ${CFLAGS}#;s#gcc#"$(tc-getCC)"#" -i Makefile || die
+}
+
 src_install(){
 	dobin sickle
 	dodoc README.md

diff --git a/sci-biology/sickle/sickle-9999.ebuild b/sci-biology/sickle/sickle-9999.ebuild
index 022474e..2288aea 100644
--- a/sci-biology/sickle/sickle-9999.ebuild
+++ b/sci-biology/sickle/sickle-9999.ebuild
@@ -4,21 +4,32 @@
 
 EAPI=5
 
-inherit eutils git-r3
+inherit eutils eutils toolchain-funcs
+
+[ "$PV" == "9999" ] && inherit git-r3
 
 DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data from Illumina/Solexa"
 HOMEPAGE="https://github.com/najoshi/sickle"
-EGIT_REPO_URI="https://github.com/najoshi/sickle"
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="https://github.com/najoshi/sickle"
+	KEYWORDS=""
+else
+	SRC_URI="https://github.com/najoshi/sickle/archive/v"${PV}".tar.gz"
+	KEYWORDS="~amd64"
+fi
 
 LICENSE="MIT"
 SLOT="0"
-KEYWORDS="~amd64"
 IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}
 	sys-libs/zlib"
 
+src_prepare(){
+	sed -e "s#-pedantic#-pedantic ${CFLAGS}#;s#gcc#"$(tc-getCC)"#" -i Makefile || die
+}
+
 src_install(){
 	dobin sickle
 	dodoc README.md