From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 105F6138CA3 for ; Thu, 5 Mar 2015 23:53:56 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 9139AE0895; Thu, 5 Mar 2015 23:53:54 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 41BA0E0895 for ; Thu, 5 Mar 2015 23:53:53 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 9D2283407EE for ; Thu, 5 Mar 2015 23:53:52 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 5635A13202 for ; Thu, 5 Mar 2015 23:53:50 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1425599596.a685e8ebaa1adefe32f5dd6db4b3e38c93b1cd07.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/BBmap/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/BBmap/BBmap-31.40.ebuild sci-biology/BBmap/BBmap-34.56.ebuild sci-biology/BBmap/ChangeLog X-VCS-Directories: sci-biology/BBmap/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: a685e8ebaa1adefe32f5dd6db4b3e38c93b1cd07 X-VCS-Branch: master Date: Thu, 5 Mar 2015 23:53:50 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 7e1b0aa6-6a67-4010-a0b7-b669ecae38bb X-Archives-Hash: ad9f0647bff7799b8be3b1787334fdcb commit: a685e8ebaa1adefe32f5dd6db4b3e38c93b1cd07 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Thu Mar 5 23:53:16 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Mar 5 23:53:16 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a685e8eb version bump Package-Manager: portage-2.2.15 .../BBmap/{BBmap-31.40.ebuild => BBmap-34.56.ebuild} | 17 +++++++++++++---- sci-biology/BBmap/ChangeLog | 6 ++++++ 2 files changed, 19 insertions(+), 4 deletions(-) diff --git a/sci-biology/BBmap/BBmap-31.40.ebuild b/sci-biology/BBmap/BBmap-34.56.ebuild similarity index 62% rename from sci-biology/BBmap/BBmap-31.40.ebuild rename to sci-biology/BBmap/BBmap-34.56.ebuild index e28c005..674e8f2 100644 --- a/sci-biology/BBmap/BBmap-31.40.ebuild +++ b/sci-biology/BBmap/BBmap-34.56.ebuild @@ -6,14 +6,13 @@ EAPI=5 inherit java-pkg-2 java-ant-2 -DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/FASTQ conversion" +DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/Q conversion" HOMEPAGE="http://sourceforge.net/projects/bbmap/" -SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java7.tar.gz" -#SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java6.tar.gz" +SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_"${PV}".tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64" IUSE="" DEPEND=" @@ -23,3 +22,13 @@ RDEPEND="${DEPEND} >=virtual/jre-1.7:*" S="${WORKDIR}"/bbmap + +src_compile(){ + ant compile || die +} + +src_install(){ + dobin *.sh + dodoc docs/readme.txt + java-pkg_dojar lib/BBTools.jar +} diff --git a/sci-biology/BBmap/ChangeLog b/sci-biology/BBmap/ChangeLog index 53acebd..8a90f18 100644 --- a/sci-biology/BBmap/ChangeLog +++ b/sci-biology/BBmap/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*BBmap-34.56 (05 Mar 2015) + + 05 Mar 2015; Martin Mokrejs +BBmap-34.56.ebuild, + -BBmap-31.40.ebuild: + version bump + 18 Feb 2015; Justin Lecher BBmap-31.40.ebuild: sci-biology/BBmap: fix SLOT operators