From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 18E43138CA3 for ; Thu, 5 Mar 2015 09:52:53 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 81F1EE085A; Thu, 5 Mar 2015 09:52:50 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 244B4E085A for ; Thu, 5 Mar 2015 09:52:49 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 73B613407EE for ; Thu, 5 Mar 2015 09:52:48 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 5EE0813158 for ; Thu, 5 Mar 2015 09:52:46 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1425549133.73e1b2f7e9caa1684ab9c9dc8f778523fc7e1c8c.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/igv/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/igv/ChangeLog sci-biology/igv/igv-2.0.35.ebuild sci-biology/igv/igv-2.3.40.ebuild X-VCS-Directories: sci-biology/igv/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 73e1b2f7e9caa1684ab9c9dc8f778523fc7e1c8c X-VCS-Branch: master Date: Thu, 5 Mar 2015 09:52:46 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 53acb720-f283-471d-bb6b-d9daba7fdc71 X-Archives-Hash: ab446b05dbfc5919821e227aa30e1daa commit: 73e1b2f7e9caa1684ab9c9dc8f778523fc7e1c8c Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Thu Mar 5 09:52:13 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Mar 5 09:52:13 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=73e1b2f7 updated ebuild to github URLs; version bump but does not compile for me Package-Manager: portage-2.2.15 sci-biology/igv/ChangeLog | 6 ++++++ .../igv/{igv-2.0.35.ebuild => igv-2.3.40.ebuild} | 25 ++++++++++++++++------ 2 files changed, 25 insertions(+), 6 deletions(-) diff --git a/sci-biology/igv/ChangeLog b/sci-biology/igv/ChangeLog index 8fe0e05..457a903 100644 --- a/sci-biology/igv/ChangeLog +++ b/sci-biology/igv/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*igv-2.3.40 (05 Mar 2015) + + 05 Mar 2015; Martin Mokrejs +igv-2.3.40.ebuild, + -igv-2.0.35.ebuild: + updated ebuild to github URLs; version bump but does not compile for me + 18 Feb 2015; Justin Lecher -igv-2.0.32.ebuild, igv-2.0.35.ebuild, metadata.xml: sci-biology/igv: fix SLOT operators; drop KEYWORDS for live ebuilds diff --git a/sci-biology/igv/igv-2.0.35.ebuild b/sci-biology/igv/igv-2.3.40.ebuild similarity index 82% rename from sci-biology/igv/igv-2.0.35.ebuild rename to sci-biology/igv/igv-2.3.40.ebuild index e5d4e93..3ed561b 100644 --- a/sci-biology/igv/igv-2.0.35.ebuild +++ b/sci-biology/igv/igv-2.3.40.ebuild @@ -4,24 +4,35 @@ EAPI=5 -#ESVN_REPO_URI="http://igv.googlecode.com/svn/trunk" -ESVN_REPO_URI="http://igv.googlecode.com/svn/tags/Version_${PV}" +inherit java-pkg-2 java-ant-2 + +[ "$PV" == "9999" ] && inherit subversion + +if [ "$PV" == "9999" ]; then + #ESVN_REPO_URI="http://igv.googlecode.com/svn/trunk" + #ESVN_REPO_URI="http://igv.googlecode.com/svn/tags/Version_${PV}" + EGIT_REPO_URI="https://github.com/broadinstitute/IGV.git" + KEYWORDS="" +else + SRC_URI="https://github.com/broadinstitute/IGV/archive/v"${PV}".zip" + KEYWORDS="" + # binaries + # http://www.broadinstitute.org/igv/projects/downloads/IGV_2.3.40.zip + # http://www.broadinstitute.org/igv/projects/downloads/igvtools_2.3.40.zip +fi EANT_BUILD_TARGET="all" JAVA_ANT_REWRITE_CLASSPATH="true" EANT_NEEDS_TOOLS="true" WANT_ANT_TASKS="ant-apache-bcel" -inherit subversion java-pkg-2 java-ant-2 - DESCRIPTION="Integrative Genomics Viewer" HOMEPAGE="http://www.broadinstitute.org/igv/" -SRC_URI="" LICENSE="LGPL-2.1" SLOT="0" IUSE="" -KEYWORDS="" +KEYWORDS="~amd64" COMMON_DEPS=" dev-java/batik @@ -45,6 +56,8 @@ DEPEND=">=virtual/jdk-1.6:* RDEPEND=">=virtual/jre-1.6:* ${COMMON_DEPS}" +S="${WORKDIR}"/IGV-"${PV}" + src_install() { java-pkg_newjar igv.jar