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Wed, 18 Feb 2015 16:41:23 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1424265832.d16e20f697612139018c0cf45bf15c05e8681f37.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/igv/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/igv/ChangeLog sci-biology/igv/igv-2.0.32.ebuild sci-biology/igv/igv-2.0.35.ebuild sci-biology/igv/metadata.xml X-VCS-Directories: sci-biology/igv/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: d16e20f697612139018c0cf45bf15c05e8681f37 X-VCS-Branch: master Date: Wed, 18 Feb 2015 16:41:23 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 29bd96c5-b603-4d44-816f-49afa3cb84d9 X-Archives-Hash: f2476ec58e2806d373c0c0354facbb27 commit: d16e20f697612139018c0cf45bf15c05e8681f37 Author: Justin Lecher gentoo org> AuthorDate: Wed Feb 18 13:23:52 2015 +0000 Commit: Justin Lecher gentoo org> CommitDate: Wed Feb 18 13:23:52 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d16e20f6 sci-biology/igv: fix SLOT operators; drop KEYWORDS for live ebuilds Package-Manager: portage-2.2.17 --- sci-biology/igv/ChangeLog | 6 +++++- sci-biology/igv/igv-2.0.32.ebuild | 35 ----------------------------------- sci-biology/igv/igv-2.0.35.ebuild | 20 +++++++++++--------- sci-biology/igv/metadata.xml | 10 +++++----- 4 files changed, 21 insertions(+), 50 deletions(-) diff --git a/sci-biology/igv/ChangeLog b/sci-biology/igv/ChangeLog index 57895e3..8fe0e05 100644 --- a/sci-biology/igv/ChangeLog +++ b/sci-biology/igv/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/igv -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 18 Feb 2015; Justin Lecher -igv-2.0.32.ebuild, + igv-2.0.35.ebuild, metadata.xml: + sci-biology/igv: fix SLOT operators; drop KEYWORDS for live ebuilds + 23 Mar 2014; Martin Mokrejs igv-2.0.35.ebuild: API bumped, whitespace removal diff --git a/sci-biology/igv/igv-2.0.32.ebuild b/sci-biology/igv/igv-2.0.32.ebuild deleted file mode 100644 index 67a0c5b..0000000 --- a/sci-biology/igv/igv-2.0.32.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=4 - -#ESVN_REPO_URI="http://igv.googlecode.com/svn/trunk" -ESVN_REPO_URI="http://igv.googlecode.com/svn/tags/Version_${PV}" - -EANT_BUILD_TARGET="all" -JAVA_ANT_REWRITE_CLASSPATH="true" -EANT_NEEDS_TOOLS="true" -WANT_ANT_TASKS="ant-apache-bcel" - -inherit subversion java-pkg-2 java-ant-2 - -DESCRIPTION="Integrative Genomics Viewer" -HOMEPAGE="http://www.broadinstitute.org/igv/" -SRC_URI="" -LICENSE="LGPL-2.1" -SLOT="0" -IUSE="" -KEYWORDS="~amd64" - -COMMON_DEPS="" -DEPEND=">=virtual/jdk-1.6 - ${COMMON_DEPS}" -RDEPEND=">=virtual/jre-1.6 - ${COMMON_DEPS}" - -src_install() { - java-pkg_newjar igv.jar - for i in lib/*.jar; do java-pkg_dojar $i; done - java-pkg_dolauncher igv --jar igv.jar --main org.broad.igv.ui.Main -} diff --git a/sci-biology/igv/igv-2.0.35.ebuild b/sci-biology/igv/igv-2.0.35.ebuild index a9021e7..e5d4e93 100644 --- a/sci-biology/igv/igv-2.0.35.ebuild +++ b/sci-biology/igv/igv-2.0.35.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -17,30 +17,32 @@ inherit subversion java-pkg-2 java-ant-2 DESCRIPTION="Integrative Genomics Viewer" HOMEPAGE="http://www.broadinstitute.org/igv/" SRC_URI="" + LICENSE="LGPL-2.1" SLOT="0" IUSE="" -KEYWORDS="~amd64" +KEYWORDS="" -COMMON_DEPS="dev-java/batik +COMMON_DEPS=" + dev-java/batik dev-java/absolutelayout dev-java/jama dev-java/commons-logging - dev-java/commons-math + dev-java/commons-math:3 dev-java/concurrent-util dev-java/jcommon dev-java/jfreechart dev-java/hdf-java dev-java/jlfgr - dev-java/junit + dev-java/junit:0 dev-java/log4j dev-db/mysql-connector-c++ sci-biology/samtools dev-java/swing-layout sci-biology/vcftools" -DEPEND=">=virtual/jdk-1.6 +DEPEND=">=virtual/jdk-1.6:* ${COMMON_DEPS}" -RDEPEND=">=virtual/jre-1.6 +RDEPEND=">=virtual/jre-1.6:* ${COMMON_DEPS}" src_install() { @@ -90,8 +92,8 @@ src_install() { # /usr/share/igv/lib/xml-apis-1.3.04.jar # /usr/share/igv/lib/xml-apis-ext-1.3.04.jar cd lib || die - rm AbsoluteLayout.jar Jama*.jar batik*.jar commons-logging*.jar commons-math*.jar concurrent*.jar jcommon*.jar jfreechart*.jar jhdf*.jar jlfgr*.jar junit*.jar log4j*.jar sam*.jar swing*.jar vcf*.jar - cd .. + rm AbsoluteLayout.jar Jama*.jar batik*.jar commons-logging*.jar commons-math*.jar concurrent*.jar jcommon*.jar jfreechart*.jar jhdf*.jar jlfgr*.jar junit*.jar log4j*.jar sam*.jar swing*.jar vcf*.jar || die + cd .. || die for i in lib/*.jar; do java-pkg_dojar $i; done diff --git a/sci-biology/igv/metadata.xml b/sci-biology/igv/metadata.xml index 3302123..fc7c769 100644 --- a/sci-biology/igv/metadata.xml +++ b/sci-biology/igv/metadata.xml @@ -1,9 +1,9 @@ - - weaver@gentoo.org - Andrey Kislyuk - - sci-biology + + weaver@gentoo.org + Andrey Kislyuk + + sci-biology