[gentoo-commits] proj/sci:master commit in: sci-biology/biopieces/

["Justin Lecher" <jlec@gentoo.org>]

commit:     c921e9ffb851dcb6c90beb29502aff76d7436fd1
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Feb 18 13:12:38 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Feb 18 13:12:38 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c921e9ff

sci-biology/biopieces: fix SLOT operators; correct ruby and python deps

Package-Manager: portage-2.2.17

---
 sci-biology/biopieces/ChangeLog             |  5 ++-
 sci-biology/biopieces/biopieces-9999.ebuild | 49 ++++++++++++++++-------------
 2 files changed, 32 insertions(+), 22 deletions(-)

diff --git a/sci-biology/biopieces/ChangeLog b/sci-biology/biopieces/ChangeLog
index 3e269ec..db06e76 100644
--- a/sci-biology/biopieces/ChangeLog
+++ b/sci-biology/biopieces/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-biology/biopieces
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Feb 2015; Justin Lecher <jlec@gentoo.org> -Manifest, biopieces-9999.ebuild:
+  sci-biology/biopieces: fix SLOT operators; correct ruby and python deps
+
   13 Nov 2014; Justin Lecher <jlec@gentoo.org> biopieces-0.51.ebuild,
   biopieces-9999.ebuild:
   Use perl virtuals instead of core

diff --git a/sci-biology/biopieces/biopieces-9999.ebuild b/sci-biology/biopieces/biopieces-9999.ebuild
index 6be82b8..d33a63f 100644
--- a/sci-biology/biopieces/biopieces-9999.ebuild
+++ b/sci-biology/biopieces/biopieces-9999.ebuild
@@ -1,51 +1,58 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
 EAPI=5
 
-[ "$PV" == "9999" ] && inherit subversion
+PYTHON_COMPAT=( python2_7 )
+
+USE_RUBY="ruby19"
 
-DESCRIPTION="Toolkit to find and trim adaptors, plot read lengths, qualities, map reads and submit to GenBank"
-HOMEPAGE="http://code.google.com/p/biopieces"
-SRC_URI=""
 if [ "$PV" == "9999" ]; then
 	ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk"
 	KEYWORDS=""
+	inherit subversion
 else
-	SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-"${PV}".sh"
+	SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh"
 	KEYWORDS=""
 fi
 
+inherit ruby-fakegem python-single-r1
+
+DESCRIPTION="Toolkit to find and trim adaptors, plot read lengths, qualities, map reads and submit to GenBank"
+HOMEPAGE="http://code.google.com/p/biopieces"
+SRC_URI=""
+
 LICENSE="GPL-2"
 SLOT="0"
 IUSE=""
 
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
 #    Ruby terminal-table ?
 
-DEPEND=">=dev-lang/perl-5.8
+DEPEND="
+	>=dev-lang/perl-5.8
+	dev-perl/libwww-perl
 	dev-perl/Bit-Vector
-	dev-perl/SVG
-	dev-perl/TermReadKey
-	virtual/perl-Time-HiRes
-	dev-perl/DBI
-	dev-perl/XML-Parser
 	dev-perl/Carp-Clan
 	dev-perl/Class-Inspector
+	dev-perl/DBD-mysql
+	dev-perl/DBI
 	dev-perl/HTML-Parser
-	dev-perl/libwww-perl
-	dev-perl/SOAP-Lite
-	dev-perl/URI
 	dev-perl/Inline
 	dev-perl/Parse-RecDescent
+	dev-perl/SOAP-Lite
+	dev-perl/SVG
+	dev-perl/TermReadKey
+	dev-perl/URI
+	dev-perl/XML-Parser
 	virtual/perl-version
 	virtual/perl-DB_File
-	dev-perl/DBD-mysql
-	>=dev-lang/python-2.6
-	dev-lang/ruby
-	dev-ruby/gnuplot
-	dev-ruby/narray
-	dev-ruby/RubyInline"
+	virtual/perl-Time-HiRes"
+
+ruby_add_bdepend "dev-ruby/RubyInline"
+ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray"
 
 # sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict
 # sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict