* [gentoo-commits] proj/sci:master commit in: sci-biology/HTSeq/
@ 2015-02-14 18:02 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2015-02-14 18:02 UTC (permalink / raw
To: gentoo-commits
commit: 0465f79fa2c23ea159ccc897cfa3720cd6e6afd2
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 14 18:00:03 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 14 18:00:03 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0465f79f
new python API
Package-Manager: portage-2.2.15
---
sci-biology/HTSeq/ChangeLog | 9 +++++++++
sci-biology/HTSeq/HTSeq-0.6.1.ebuild | 23 +++++++++++++++++++++++
sci-biology/HTSeq/metadata.xml | 9 +++++++++
3 files changed, 41 insertions(+)
diff --git a/sci-biology/HTSeq/ChangeLog b/sci-biology/HTSeq/ChangeLog
new file mode 100644
index 0000000..c9934fb
--- /dev/null
+++ b/sci-biology/HTSeq/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/HTSeq
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*HTSeq-0.6.1 (14 Feb 2015)
+
+ 14 Feb 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +HTSeq-0.6.1.ebuild,
+ +metadata.xml:
+ new python API
diff --git a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
new file mode 100644
index 0000000..a1eb736
--- /dev/null
+++ b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit distutils-r1
+
+DESCRIPTION="Use SAM/BAM/FASTA/Q/GFF/GTF files in python, count reads, genomic intervals"
+HOMEPAGE="http://www-huber.embl.de/users/anders/HTSeq"
+SRC_URI="mirror://pypi/H/"${PN}"/"${P}".tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ sci-biology/pysam[${PYTHON_USEDEP}]"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/HTSeq/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/HTSeq/
@ 2015-02-14 20:20 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2015-02-14 20:20 UTC (permalink / raw
To: gentoo-commits
commit: fb70a9e007b3bedda64524aa4dd54abb4751265b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 14 20:18:20 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 14 20:18:20 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fb70a9e0
mention also Bowtie file format
Package-Manager: portage-2.2.15
---
sci-biology/HTSeq/ChangeLog | 3 +++
sci-biology/HTSeq/HTSeq-0.6.1.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-biology/HTSeq/ChangeLog b/sci-biology/HTSeq/ChangeLog
index c9934fb..8e87c78 100644
--- a/sci-biology/HTSeq/ChangeLog
+++ b/sci-biology/HTSeq/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 14 Feb 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> HTSeq-0.6.1.ebuild:
+ mention also Bowtie file format
+
*HTSeq-0.6.1 (14 Feb 2015)
14 Feb 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +HTSeq-0.6.1.ebuild,
diff --git a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
index a1eb736..37af947 100644
--- a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
+++ b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python{2_6,2_7} )
inherit distutils-r1
-DESCRIPTION="Use SAM/BAM/FASTA/Q/GFF/GTF files in python, count reads, genomic intervals"
+DESCRIPTION="Use SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files in python, count reads, genomic intervals"
HOMEPAGE="http://www-huber.embl.de/users/anders/HTSeq"
SRC_URI="mirror://pypi/H/"${PN}"/"${P}".tar.gz"
^ permalink raw reply related [flat|nested] 4+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/HTSeq/
@ 2017-01-29 20:25 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2017-01-29 20:25 UTC (permalink / raw
To: gentoo-commits
commit: a65b1f3e8c36e2b861400df5df6b02d40db7dcbf
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 29 20:19:50 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 29 20:25:15 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a65b1f3e
sci-biology/HTSeq: QA fixes
Bump to EAPI 6
shorten DESCRIPTION
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/HTSeq/HTSeq-0.6.1.ebuild | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
index dac9ded..a7bda99 100644
--- a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
+++ b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
@@ -1,14 +1,14 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
PYTHON_COMPAT=( python2_7 )
inherit distutils-r1
-DESCRIPTION="Use SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files in python, count reads, genomic intervals"
+DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
HOMEPAGE="http://www-huber.embl.de/users/anders/HTSeq"
SRC_URI="mirror://pypi/H/"${PN}"/"${P}".tar.gz"
@@ -17,7 +17,8 @@ SLOT="0"
KEYWORDS="~amd64"
IUSE=""
-DEPEND="dev-python/numpy[${PYTHON_USEDEP}]
+DEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
sci-biology/pysam[${PYTHON_USEDEP}]"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 4+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/HTSeq/
@ 2017-11-16 17:56 David Seifert
0 siblings, 0 replies; 4+ messages in thread
From: David Seifert @ 2017-11-16 17:56 UTC (permalink / raw
To: gentoo-commits
commit: d9e7176528eaf41a5029a5cce4d8201e524df107
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 16 17:55:21 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Nov 16 17:55:59 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d9e71765
sci-biology/HTSeq: In main tree
sci-biology/HTSeq/HTSeq-0.6.1.ebuild | 23 -----------------------
sci-biology/HTSeq/metadata.xml | 15 ---------------
2 files changed, 38 deletions(-)
diff --git a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
deleted file mode 100644
index 70fdb733e..000000000
--- a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
+++ /dev/null
@@ -1,23 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
-HOMEPAGE="http://www-huber.embl.de/users/anders/HTSeq"
-SRC_URI="mirror://pypi/H/"${PN}"/"${P}".tar.gz"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND="
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- sci-biology/pysam[${PYTHON_USEDEP}]"
-RDEPEND="${DEPEND}"
diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml
deleted file mode 100644
index b08ab454b..000000000
--- a/sci-biology/HTSeq/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="pypi">HTSeq</remote-id>
- </upstream>
-</pkgmetadata>
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