From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id CA2D1138A1A for ; Sat, 14 Feb 2015 18:02:32 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 7F048E0920; Sat, 14 Feb 2015 18:02:31 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 247A2E0920 for ; Sat, 14 Feb 2015 18:02:30 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id CC35A3407D4 for ; Sat, 14 Feb 2015 18:02:28 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id D2BD011C11 for ; Sat, 14 Feb 2015 18:02:26 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1423936803.0465f79fa2c23ea159ccc897cfa3720cd6e6afd2.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/HTSeq/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/HTSeq/ChangeLog sci-biology/HTSeq/HTSeq-0.6.1.ebuild sci-biology/HTSeq/metadata.xml X-VCS-Directories: sci-biology/HTSeq/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 0465f79fa2c23ea159ccc897cfa3720cd6e6afd2 X-VCS-Branch: master Date: Sat, 14 Feb 2015 18:02:26 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 542d7b4e-9829-4b70-b0b2-b92d79596ef5 X-Archives-Hash: 3accd248230d4a587add64a8c0a5d0da commit: 0465f79fa2c23ea159ccc897cfa3720cd6e6afd2 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sat Feb 14 18:00:03 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sat Feb 14 18:00:03 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0465f79f new python API Package-Manager: portage-2.2.15 --- sci-biology/HTSeq/ChangeLog | 9 +++++++++ sci-biology/HTSeq/HTSeq-0.6.1.ebuild | 23 +++++++++++++++++++++++ sci-biology/HTSeq/metadata.xml | 9 +++++++++ 3 files changed, 41 insertions(+) diff --git a/sci-biology/HTSeq/ChangeLog b/sci-biology/HTSeq/ChangeLog new file mode 100644 index 0000000..c9934fb --- /dev/null +++ b/sci-biology/HTSeq/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/HTSeq +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*HTSeq-0.6.1 (14 Feb 2015) + + 14 Feb 2015; Martin Mokrejs +HTSeq-0.6.1.ebuild, + +metadata.xml: + new python API diff --git a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild new file mode 100644 index 0000000..a1eb736 --- /dev/null +++ b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python{2_6,2_7} ) + +inherit distutils-r1 + +DESCRIPTION="Use SAM/BAM/FASTA/Q/GFF/GTF files in python, count reads, genomic intervals" +HOMEPAGE="http://www-huber.embl.de/users/anders/HTSeq" +SRC_URI="mirror://pypi/H/"${PN}"/"${P}".tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}]" +RDEPEND="${DEPEND}" diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/HTSeq/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +