[gentoo-commits] proj/sci:master commit in: sci-biology/HTSeq/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     0465f79fa2c23ea159ccc897cfa3720cd6e6afd2
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 14 18:00:03 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 14 18:00:03 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0465f79f

new python API

Package-Manager: portage-2.2.15

---
 sci-biology/HTSeq/ChangeLog          |  9 +++++++++
 sci-biology/HTSeq/HTSeq-0.6.1.ebuild | 23 +++++++++++++++++++++++
 sci-biology/HTSeq/metadata.xml       |  9 +++++++++
 3 files changed, 41 insertions(+)

diff --git a/sci-biology/HTSeq/ChangeLog b/sci-biology/HTSeq/ChangeLog
new file mode 100644
index 0000000..c9934fb
--- /dev/null
+++ b/sci-biology/HTSeq/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/HTSeq
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*HTSeq-0.6.1 (14 Feb 2015)
+
+  14 Feb 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +HTSeq-0.6.1.ebuild,
+  +metadata.xml:
+  new python API

diff --git a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
new file mode 100644
index 0000000..a1eb736
--- /dev/null
+++ b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit distutils-r1
+
+DESCRIPTION="Use SAM/BAM/FASTA/Q/GFF/GTF files in python, count reads, genomic intervals"
+HOMEPAGE="http://www-huber.embl.de/users/anders/HTSeq"
+SRC_URI="mirror://pypi/H/"${PN}"/"${P}".tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	sci-biology/pysam[${PYTHON_USEDEP}]"
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/HTSeq/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>