* [gentoo-commits] proj/sci:master commit in: sci-biology/primerD/
@ 2015-02-13 21:53 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2015-02-13 21:53 UTC (permalink / raw
To: gentoo-commits
commit: db6da9e797597d6c9ea43fce8adf4af218c013fc
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Feb 13 21:50:14 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Feb 13 21:50:14 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=db6da9e7
edit the bundled Makefile
Package-Manager: portage-2.2.15
---
sci-biology/primerD/ChangeLog | 5 ++++-
sci-biology/primerD/primerD-1.0.0.ebuild | 13 +++++++++++++
2 files changed, 17 insertions(+), 1 deletion(-)
diff --git a/sci-biology/primerD/ChangeLog b/sci-biology/primerD/ChangeLog
index 55298f3..f98ebf8 100644
--- a/sci-biology/primerD/ChangeLog
+++ b/sci-biology/primerD/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 13 Feb 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ primerD-1.0.0.ebuild:
+ edit the bundled Makefile
+
10 Jan 2015; Justin Lecher <jlec@gentoo.org> primerD-1.0.0.ebuild:
Fix license
@@ -10,4 +14,3 @@
07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+primerD-1.0.0.ebuild, +metadata.xml:
ebuild skeleton
-
diff --git a/sci-biology/primerD/primerD-1.0.0.ebuild b/sci-biology/primerD/primerD-1.0.0.ebuild
index 2dbabc8..a77c039 100644
--- a/sci-biology/primerD/primerD-1.0.0.ebuild
+++ b/sci-biology/primerD/primerD-1.0.0.ebuild
@@ -4,6 +4,8 @@
EAPI=5
+inherit toolchain-funcs
+
DESCRIPTION="Design degenerate primers"
HOMEPAGE="http://mblab.wustl.edu/software.html"
SRC_URI="http://mblab.wustl.edu/software/download/primerD.tar.gz -> primerD-1.0.tar.gz"
@@ -12,3 +14,14 @@ LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS=""
IUSE=""
+
+S="${WORKDIR}"/primerD
+
+src_prepare(){
+ sed -e "s:CC=g++:CC=$(tc-getCXX):; s:-Wall -g:${CFLAGS}:" -i Makefile || die
+}
+
+src_install(){
+ dodoc README
+ dobin primerD
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/primerD/
@ 2022-01-25 13:10 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2022-01-25 13:10 UTC (permalink / raw
To: gentoo-commits
commit: f5a3b3f1fc417be8e9577e8e7a85d2aa6fa5db42
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 13:10:25 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 13:10:25 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f5a3b3f1
sci-biology/primerD: drop dead package
last update 2012!
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/primerD/metadata.xml | 12 ---------
sci-biology/primerD/primerD-1.0.0.ebuild | 42 --------------------------------
2 files changed, 54 deletions(-)
diff --git a/sci-biology/primerD/metadata.xml b/sci-biology/primerD/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/primerD/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-biology/primerD/primerD-1.0.0.ebuild b/sci-biology/primerD/primerD-1.0.0.ebuild
deleted file mode 100644
index 6d46832a9..000000000
--- a/sci-biology/primerD/primerD-1.0.0.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit toolchain-funcs
-
-DESCRIPTION="Design degenerate primers"
-HOMEPAGE="https://mblab.wustl.edu/software.html"
-SRC_URI="primerD.tar.gz"
-#SRC_URI="https://mblab.wustl.edu/software/download/primerD.tar.gz -> primerD-1.0.tar.gz"
-# ERROR: cannot verify mblab.wustl.edu's certificate, issued by ‘CN=InCommon RSA Server CA,OU=InCommon,O=Internet2,L=Ann Arbor,ST=MI,C=US’:
-# Unable to locally verify the issuer's authority.
-# To connect to mblab.wustl.edu insecurely, use `--no-check-certificate'.
-RESTRICT="fetch"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-# make: *** No rule to make target '/usr/include/linux/new.h', needed by 'Main.o'. Stop.
-KEYWORDS=""
-
-S="${WORKDIR}"/primerD
-
-src_prepare(){
- default
- sed -i -e "s:CC=g++:CC=$(tc-getCXX):; s:-Wall -g:${CFLAGS}:" \
- -e "s:/usr/include/g++-3/stl_algobase.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/bits/stl_algobase.h:g" \
- -e "s:/usr/include/g++-3/stl_relops.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/bits/stl_relops.h:g" \
- -e "s:/usr/include/g++-3/stl_pair.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/bits/stl_pair.h:g" \
- -e "s:/usr/include/g++-3/type_traits.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/ext/type_traits.h:g" \
- -e "s:/usr/include/g++-3/stl_config.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/pstl/pstl_config.h:g" \
- -e "s:/usr/include/g++-3/:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/:g" \
- -e "s:/usr/include/_G_config.h:/usr/include/stdio.h:g" \
- -e "s:/usr/lib/gcc-lib/i386-redhat-linux/2.96/include/:/usr/include/linux/:g" \
- Makefile || die
-
-}
-
-src_install(){
- dodoc README
- dobin primerD
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/primerD/
@ 2021-08-31 9:45 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2021-08-31 9:45 UTC (permalink / raw
To: gentoo-commits
commit: 66034a17eb03ca7e7d8ef90bcaabd5adcc5ed8cf
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 31 09:39:17 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Aug 31 09:39:17 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=66034a17
sci-biology/primerD: move RESTRICT
Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/primerD/primerD-1.0.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/primerD/primerD-1.0.0.ebuild b/sci-biology/primerD/primerD-1.0.0.ebuild
index b5365336a..6d46832a9 100644
--- a/sci-biology/primerD/primerD-1.0.0.ebuild
+++ b/sci-biology/primerD/primerD-1.0.0.ebuild
@@ -7,12 +7,12 @@ inherit toolchain-funcs
DESCRIPTION="Design degenerate primers"
HOMEPAGE="https://mblab.wustl.edu/software.html"
+SRC_URI="primerD.tar.gz"
#SRC_URI="https://mblab.wustl.edu/software/download/primerD.tar.gz -> primerD-1.0.tar.gz"
# ERROR: cannot verify mblab.wustl.edu's certificate, issued by ‘CN=InCommon RSA Server CA,OU=InCommon,O=Internet2,L=Ann Arbor,ST=MI,C=US’:
# Unable to locally verify the issuer's authority.
# To connect to mblab.wustl.edu insecurely, use `--no-check-certificate'.
RESTRICT="fetch"
-SRC_URI="primerD.tar.gz"
LICENSE="LGPL-2.1"
SLOT="0"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/primerD/
@ 2021-02-03 6:33 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2021-02-03 6:33 UTC (permalink / raw
To: gentoo-commits
commit: 38747aba5b528c356618d31da8f9275c0d7b618d
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Feb 3 06:33:43 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Feb 3 06:33:43 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=38747aba
sci-biology/primerD: fix some include statements
though it still does not compile
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/primerD/primerD-1.0.0.ebuild | 14 +++++++++++++-
1 file changed, 13 insertions(+), 1 deletion(-)
diff --git a/sci-biology/primerD/primerD-1.0.0.ebuild b/sci-biology/primerD/primerD-1.0.0.ebuild
index 1aefce6cb..b5365336a 100644
--- a/sci-biology/primerD/primerD-1.0.0.ebuild
+++ b/sci-biology/primerD/primerD-1.0.0.ebuild
@@ -16,12 +16,24 @@ SRC_URI="primerD.tar.gz"
LICENSE="LGPL-2.1"
SLOT="0"
+# make: *** No rule to make target '/usr/include/linux/new.h', needed by 'Main.o'. Stop.
KEYWORDS=""
S="${WORKDIR}"/primerD
src_prepare(){
- sed -e "s:CC=g++:CC=$(tc-getCXX):; s:-Wall -g:${CFLAGS}:" -i Makefile || die
+ default
+ sed -i -e "s:CC=g++:CC=$(tc-getCXX):; s:-Wall -g:${CFLAGS}:" \
+ -e "s:/usr/include/g++-3/stl_algobase.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/bits/stl_algobase.h:g" \
+ -e "s:/usr/include/g++-3/stl_relops.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/bits/stl_relops.h:g" \
+ -e "s:/usr/include/g++-3/stl_pair.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/bits/stl_pair.h:g" \
+ -e "s:/usr/include/g++-3/type_traits.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/ext/type_traits.h:g" \
+ -e "s:/usr/include/g++-3/stl_config.h:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/pstl/pstl_config.h:g" \
+ -e "s:/usr/include/g++-3/:/usr/lib/gcc/${CHOST}/$(gcc-fullversion)/include/g++-v$(gcc-major-version )/:g" \
+ -e "s:/usr/include/_G_config.h:/usr/include/stdio.h:g" \
+ -e "s:/usr/lib/gcc-lib/i386-redhat-linux/2.96/include/:/usr/include/linux/:g" \
+ Makefile || die
+
}
src_install(){
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/primerD/
@ 2015-01-10 14:37 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-01-10 14:37 UTC (permalink / raw
To: gentoo-commits
commit: 682702ad64751e60f5208af904c5f900f3931c5d
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 10 14:35:02 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jan 10 14:35:02 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=682702ad
sci-biology/primerD: Fix license
Package-Manager: portage-2.2.15
---
sci-biology/primerD/ChangeLog | 3 +++
sci-biology/primerD/primerD-1.0.0.ebuild | 5 +----
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/primerD/ChangeLog b/sci-biology/primerD/ChangeLog
index f75108a..55298f3 100644
--- a/sci-biology/primerD/ChangeLog
+++ b/sci-biology/primerD/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 10 Jan 2015; Justin Lecher <jlec@gentoo.org> primerD-1.0.0.ebuild:
+ Fix license
+
*primerD-1.0.0 (07 Jan 2015)
07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/sci-biology/primerD/primerD-1.0.0.ebuild b/sci-biology/primerD/primerD-1.0.0.ebuild
index 21163db..2dbabc8 100644
--- a/sci-biology/primerD/primerD-1.0.0.ebuild
+++ b/sci-biology/primerD/primerD-1.0.0.ebuild
@@ -8,10 +8,7 @@ DESCRIPTION="Design degenerate primers"
HOMEPAGE="http://mblab.wustl.edu/software.html"
SRC_URI="http://mblab.wustl.edu/software/download/primerD.tar.gz -> primerD-1.0.tar.gz"
-LICENSE=""
+LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS=""
IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/primerD/
@ 2015-01-07 21:42 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2015-01-07 21:42 UTC (permalink / raw
To: gentoo-commits
commit: 92575f215ce3ea9efcfa46326947ba00e4676742
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jan 7 21:41:02 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jan 7 21:41:02 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=92575f21
ebuild skeleton
---
sci-biology/primerD/ChangeLog | 10 ++++++++++
sci-biology/primerD/metadata.xml | 9 +++++++++
sci-biology/primerD/primerD-1.0.0.ebuild | 17 +++++++++++++++++
3 files changed, 36 insertions(+)
diff --git a/sci-biology/primerD/ChangeLog b/sci-biology/primerD/ChangeLog
new file mode 100644
index 0000000..f75108a
--- /dev/null
+++ b/sci-biology/primerD/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/primerD
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*primerD-1.0.0 (07 Jan 2015)
+
+ 07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +primerD-1.0.0.ebuild, +metadata.xml:
+ ebuild skeleton
+
diff --git a/sci-biology/primerD/metadata.xml b/sci-biology/primerD/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/primerD/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/primerD/primerD-1.0.0.ebuild b/sci-biology/primerD/primerD-1.0.0.ebuild
new file mode 100644
index 0000000..21163db
--- /dev/null
+++ b/sci-biology/primerD/primerD-1.0.0.ebuild
@@ -0,0 +1,17 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Design degenerate primers"
+HOMEPAGE="http://mblab.wustl.edu/software.html"
+SRC_URI="http://mblab.wustl.edu/software/download/primerD.tar.gz -> primerD-1.0.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 6+ messages in thread
end of thread, other threads:[~2022-01-25 13:10 UTC | newest]
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