* [gentoo-commits] proj/sci:master commit in: sci-biology/sabre/
@ 2015-01-15 11:46 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2015-01-15 11:46 UTC (permalink / raw
To: gentoo-commits
commit: 0d09d404b268844e465c95d67083f0cce0d1e1e4
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan 15 11:44:16 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jan 15 11:44:16 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0d09d404
sci-biology/sabre: new package
Package-Manager: portage-2.2.7
---
sci-biology/sabre/ChangeLog | 9 +++++++++
sci-biology/sabre/metadata.xml | 9 +++++++++
sci-biology/sabre/sabre-9999.ebuild | 39 +++++++++++++++++++++++++++++++++++++
3 files changed, 57 insertions(+)
diff --git a/sci-biology/sabre/ChangeLog b/sci-biology/sabre/ChangeLog
new file mode 100644
index 0000000..f7f747f
--- /dev/null
+++ b/sci-biology/sabre/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/sabre
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*sabre-9999 (15 Jan 2015)
+
+ 15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +sabre-9999.ebuild:
+ sci-biology/sabre: new package
diff --git a/sci-biology/sabre/metadata.xml b/sci-biology/sabre/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/sabre/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/sabre/sabre-9999.ebuild b/sci-biology/sabre/sabre-9999.ebuild
new file mode 100644
index 0000000..2aee701
--- /dev/null
+++ b/sci-biology/sabre/sabre-9999.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+[ "$PV" == "9999" ] && inherit git-2
+
+inherit toolchain-funcs
+
+DESCRIPTION="Barcode demultiplexing and trimming tool for Illumina FastQ files"
+HOMEPAGE="https://github.com/najoshi/sabre"
+if [ "$PV" == "9999" ]; then
+ EGIT_REPO_URI="https://github.com/najoshi/sabre.git"
+ KEYWORDS=""
+else
+ SRC_URI=""
+ KEYWORDS=""
+fi
+
+
+LICENSE="MIT" # almost verbatim
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sys-libs/zlib"
+RDEPEND="${DEPEND}"
+
+S="${S}"/src
+
+src_prepare(){
+ sed -e "s#OPT = -O3#OPT = ${CFLAGS}#" \
+ -e "s#CC = gcc#CC = $(tc-getCC)#" -i Makefile || die
+}
+
+src_install(){
+ dobin sabre
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/sabre/
@ 2015-02-10 14:37 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-02-10 14:37 UTC (permalink / raw
To: gentoo-commits
commit: cfce56ba1694696089583b40e292c5a1b2793ebb
Author: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Mon Feb 9 09:06:35 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Feb 9 09:08:53 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=cfce56ba
sci-biology/sabre-9999: Switch from git-2 to git-r3; Cleanup
---
sci-biology/sabre/ChangeLog | 3 +++
sci-biology/sabre/sabre-9999.ebuild | 5 +----
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/sabre/ChangeLog b/sci-biology/sabre/ChangeLog
index f7f747f..fb47d23 100644
--- a/sci-biology/sabre/ChangeLog
+++ b/sci-biology/sabre/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 09 Feb 2015; Marius Brehler <marbre@linux.sungazer.de> sabre-9999.ebuild:
+ Switch from git-2 to git-r3; Cleanup
+
*sabre-9999 (15 Jan 2015)
15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
diff --git a/sci-biology/sabre/sabre-9999.ebuild b/sci-biology/sabre/sabre-9999.ebuild
index 2aee701..cd253bb 100644
--- a/sci-biology/sabre/sabre-9999.ebuild
+++ b/sci-biology/sabre/sabre-9999.ebuild
@@ -4,7 +4,7 @@
EAPI=5
-[ "$PV" == "9999" ] && inherit git-2
+[ "$PV" == "9999" ] && inherit git-r3
inherit toolchain-funcs
@@ -18,11 +18,8 @@ else
KEYWORDS=""
fi
-
LICENSE="MIT" # almost verbatim
SLOT="0"
-KEYWORDS=""
-IUSE=""
DEPEND="sys-libs/zlib"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/sabre/
@ 2015-06-05 11:20 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-06-05 11:20 UTC (permalink / raw
To: gentoo-commits
commit: 149311f137532653ce111f0afeeb7fd38f231578
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 5 11:10:26 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 5 11:10:26 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=149311f1
sci-biology/sabre: Add github to remote-id in metadata.xml
Package-Manager: portage-2.2.20
sci-biology/sabre/ChangeLog | 3 +++
sci-biology/sabre/metadata.xml | 3 +++
2 files changed, 6 insertions(+)
diff --git a/sci-biology/sabre/ChangeLog b/sci-biology/sabre/ChangeLog
index fb47d23..a43393a 100644
--- a/sci-biology/sabre/ChangeLog
+++ b/sci-biology/sabre/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 05 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
+ sci-biology/sabre: Add github to remote-id in metadata.xml
+
09 Feb 2015; Marius Brehler <marbre@linux.sungazer.de> sabre-9999.ebuild:
Switch from git-2 to git-r3; Cleanup
diff --git a/sci-biology/sabre/metadata.xml b/sci-biology/sabre/metadata.xml
index 2bc8930..dfc8081 100644
--- a/sci-biology/sabre/metadata.xml
+++ b/sci-biology/sabre/metadata.xml
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="github">najoshi/sabre</remote-id>
+ </upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/sabre/
@ 2021-03-06 13:59 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-03-06 13:59 UTC (permalink / raw
To: gentoo-commits
commit: 36fe612e94cbe92735a427847d06e30edc4285a7
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 6 13:53:20 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 6 13:53:20 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=36fe612e
sci-biology/sabre: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/sabre/sabre-9999.ebuild | 10 ++++------
1 file changed, 4 insertions(+), 6 deletions(-)
diff --git a/sci-biology/sabre/sabre-9999.ebuild b/sci-biology/sabre/sabre-9999.ebuild
index bfa4bde63..afcefa226 100644
--- a/sci-biology/sabre/sabre-9999.ebuild
+++ b/sci-biology/sabre/sabre-9999.ebuild
@@ -1,15 +1,14 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
-
-[ "$PV" == "9999" ] && inherit git-r3
+EAPI=7
inherit toolchain-funcs
DESCRIPTION="Barcode demultiplexing and trimming tool for Illumina FastQ files"
HOMEPAGE="https://github.com/najoshi/sabre"
if [ "$PV" == "9999" ]; then
+ inherit git-r3
EGIT_REPO_URI="https://github.com/najoshi/sabre.git"
KEYWORDS=""
else
@@ -23,9 +22,8 @@ SLOT="0"
DEPEND="sys-libs/zlib"
RDEPEND="${DEPEND}"
-S="${S}"/src
-
src_prepare(){
+ default
sed -e "s#OPT = -O3#OPT = ${CFLAGS}#" \
-e "s#CC = gcc#CC = $(tc-getCC)#" -i Makefile || die
}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/sabre/
@ 2021-03-20 11:03 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-03-20 11:03 UTC (permalink / raw
To: gentoo-commits
commit: 313544ac531eef2801dfa66fb562d5e89bde5c7d
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 20 11:00:26 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 20 11:00:26 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=313544ac
sci-biology/sabre: fix MultipleKeywordsLines
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/sabre/sabre-9999.ebuild | 1 -
1 file changed, 1 deletion(-)
diff --git a/sci-biology/sabre/sabre-9999.ebuild b/sci-biology/sabre/sabre-9999.ebuild
index afcefa226..222fcac9a 100644
--- a/sci-biology/sabre/sabre-9999.ebuild
+++ b/sci-biology/sabre/sabre-9999.ebuild
@@ -10,7 +10,6 @@ HOMEPAGE="https://github.com/najoshi/sabre"
if [ "$PV" == "9999" ]; then
inherit git-r3
EGIT_REPO_URI="https://github.com/najoshi/sabre.git"
- KEYWORDS=""
else
SRC_URI=""
KEYWORDS=""
^ permalink raw reply related [flat|nested] 5+ messages in thread
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